PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G122700.1
Common NamePOPTR_0014s11780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 418aa    MW: 46510 Da    PI: 4.8838
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G122700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +grWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Potri.014G122700.1 14 KGRWTAEEDEKLTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding54.92.1e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ ++eE+e+++++++ lG++ W++Ia++++ gRt++++k++w+++l
  Potri.014G122700.1  67 RGNISAEEEEIIINLHASLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                         7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.066961IPR017930Myb domain
SuperFamilySSF466894.49E-2811108IPR009057Homeodomain-like
SMARTSM007171.2E-111363IPR001005SANT/Myb domain
PfamPF002493.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-211568IPR009057Homeodomain-like
CDDcd001674.41E-91661No hitNo description
PROSITE profilePS5129425.14662116IPR017930Myb domain
SMARTSM007174.3E-1766114IPR001005SANT/Myb domain
PfamPF002492.3E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2569116IPR009057Homeodomain-like
CDDcd001671.75E-780112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEKLTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LAADLKRGNI SAEEEEIIIN LHASLGNRWS LIASHLPGRT DNEIKNYWNS HLSRRIYSFR  120
RPVNERLPLI IETAKQGMLA KSGAGRFAIK KKKISHPQKD AIRVPTKRPR KENNTGDFSN  180
SNIEGIQLPQ TPAAEKNTLS STINDTVIWD PCAEDKELMD LVVTTPCPET GRVMLGSSGE  240
KANLVICPGE ERRRPNSIFH PSGGEKENDS FGQFCEGIEN EMLSFNEVMG KELLDPDGDS  300
SLNDEGQNGL LVHSGERQSG VSSPDKTVDV FESIGDLSSN GESCDWHSFS SISTSGFDDC  360
GVDWSWDDVM GGHLEIGDET KEENMLSWLW ENEKGEEVVN YEKQNAMLLG FFLDLPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-23121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
1mse_C9e-24121162105C-Myb DNA-Binding Domain
1msf_C9e-24121162105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G122700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2087310.0AC208731.1 Populus trichocarpa clone JGIACSB1073-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440665.10.0protein ODORANT1
TrEMBLB9I9L10.0B9I9L1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s11780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2814433
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-67myb domain protein 111