PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G119800.2 | ||||||||
Common Name | POPTR_0014s11490g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 236aa MW: 26838.7 Da PI: 4.8538 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.4 | 3.9e-30 | 25 | 83 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v+++tY+++Hnh+ Potri.014G119800.2 25 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASVLIVTYTSNHNHP 83 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-31 | 17 | 85 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-26 | 21 | 85 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-35 | 24 | 84 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.169 | 25 | 85 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-25 | 26 | 83 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVEKIVVRVR IGENAVKLKN EGPPSDFWSW RKYGQKPIKG SPYPRGYYRC STSKGCSAKK 60 QVERCRTDAS VLIVTYTSNH NHPGPDLHDS NVNQQPRDPE TPPTDLVDHP ITPKQEKPEE 120 ETGERHDHPI MPSTDEDVSE GHNFHYLESP IRIPQDIMIS QDYPFTENSE KSHDTLGIVF 180 DEEPICCSRL MTFSAPKSEE NNDFFDELEE LPTSSSFTSF VRGNFFDERI PVVPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-20 | 25 | 85 | 17 | 79 | Disease resistance protein RRS1 |
5w3x_D | 1e-20 | 25 | 85 | 17 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G119800.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377423 | 0.0 | GQ377423.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041119.1 | 1e-152 | PREDICTED: probable WRKY transcription factor 69 isoform X1 | ||||
TrEMBL | B9I9I2 | 1e-174 | B9I9I2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s11490.1 | 1e-175 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 4e-33 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G119800.2 |
Entrez Gene | 7455426 |