PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G119800.1 | ||||||||
Common Name | POPTR_0014s11490g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 263aa MW: 29899.1 Da PI: 5.1105 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.2 | 4.7e-30 | 52 | 110 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v+++tY+++Hnh+ Potri.014G119800.1 52 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASVLIVTYTSNHNHP 110 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-31 | 44 | 112 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-26 | 48 | 112 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-35 | 51 | 111 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.169 | 52 | 112 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-25 | 53 | 110 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDSSPSRKLD SNVSELTPET QTSKRRKMVE KIVVRVRIGE NAVKLKNEGP PSDFWSWRKY 60 GQKPIKGSPY PRGYYRCSTS KGCSAKKQVE RCRTDASVLI VTYTSNHNHP GPDLHDSNVN 120 QQPRDPETPP TDLVDHPITP KQEKPEEETG ERHDHPIMPS TDEDVSEGHN FHYLESPIRI 180 PQDIMISQDY PFTENSEKSH DTLGIVFDEE PICCSRLMTF SAPKSEENND FFDELEELPT 240 SSSFTSFVRG NFFDERIPVV PS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-20 | 52 | 112 | 17 | 79 | Disease resistance protein RRS1 |
5w3x_D | 1e-20 | 52 | 112 | 17 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G119800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041119.1 | 1e-172 | PREDICTED: probable WRKY transcription factor 69 isoform X1 | ||||
TrEMBL | B9I9I2 | 0.0 | B9I9I2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s11490.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9708 | 32 | 41 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 3e-35 | WRKY DNA-binding protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G119800.1 |
Entrez Gene | 7455426 |