PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G118200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 320aa MW: 35894.1 Da PI: 7.6242 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.5 | 3.3e-34 | 158 | 215 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp+vv++tYeg+H+h+ Potri.014G118200.1 158 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFSDPSVVVTTYEGQHTHP 215 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 9.3E-108 | 1 | 319 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 8.3E-35 | 142 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-29 | 149 | 217 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.961 | 152 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-40 | 157 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-27 | 158 | 215 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MERREVVKVE KFDGSPAFST TNDHVQTSYP FMQGQYGFNF VDGDKNALGF MELLGMQDFS 60 PLLDMIQVPV PPAQAPNVQV VTESPPELLN QPATPNSSSI SSASSEGLND EPVNKSVDDE 120 VEEQEKNKKE LKPKKTNQKR QREPRFAFMT KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY 180 YRCTTASCNV KKRVERSFSD PSVVVTTYEG QHTHPSPVMP RPNFTGPASD SGFSSTAAFV 240 MPMQRRLSFY QQHQSRQQQP PFVNSLSPLG FGYNGSNTNA AAINYLKYEK RFCSSSGSTL 300 LNDHGLLQDL VPSHMLKEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-28 | 147 | 218 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-28 | 147 | 218 | 7 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G118200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320967.3 | 0.0 | probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 4e-68 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A2K1XU83 | 0.0 | A0A2K1XU83_POPTR; WRKY transcription factor | ||||
STRING | POPTR_0014s11350.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1002 | 34 | 114 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 2e-59 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G118200.1 |
Publications ? help Back to Top | |||
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