PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G111900.1
Common NamePOPTR_0014s10750g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 503aa    MW: 54065.4 Da    PI: 7.3871
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G111900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.3e-31266324259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Potri.014G111900.1 266 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILITTYEGNHNHP 324
                         7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-33250326IPR003657WRKY domain
SuperFamilySSF1182909.94E-28258326IPR003657WRKY domain
PROSITE profilePS5081129.976260326IPR003657WRKY domain
SMARTSM007747.7E-37265325IPR003657WRKY domain
PfamPF031061.3E-26267324IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDKQGRELVF FHSGDFLRQN PGVSDHTNDS SGDHTRSITK EVDFFSTDRT SELPGTDQEK  60
RISTIGSSSL VDSSINTGLN LLTSNSGISI IANVKNPDNN ELSGLQGELE RLHDENKKLR  120
SLLDQITKSY RDLQAQLIMA TQKQTQGNRI EQKGELNDTP GSIMSAQHLM DPRPRPSVTL  180
DVNDPSVSDD KTQEVLVSST NTVGTKSQML GKRASMEDGL DQTSQSWGSS KSPKLEHEKP  240
DEQTPEVPFR KARVSVRARS DAPLISDGCQ WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR  300
KQVQRCAEDK TILITTYEGN HNHPLPPAAT AMASTTSAAA AMLLSGSTTS KEGLSSSSSF  360
YPSFPYASTM ATLSASAPFP TITLDLTQGP NTTMPFHRTS PSPATFPLPL HGFPQLLGHP  420
MYASPKLPAI PSVQLGQRHA SMVETVTAAI ASDPNFTAAL AAAISTFMGT PRSSDGANNH  480
NAPSGIPGSP QLPQSCTTFS TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21252328176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G111900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485770.0EF148577.1 Populus trichocarpa x Populus deltoides clone WS0134_F08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440069.10.0probable WRKY transcription factor 47
TrEMBLA0A2K1XTX70.0A0A2K1XTX7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.19e-97WRKY family protein