PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G111900.1 | ||||||||
Common Name | POPTR_0014s10750g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 503aa MW: 54065.4 Da PI: 7.3871 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.3e-31 | 266 | 324 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ Potri.014G111900.1 266 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILITTYEGNHNHP 324 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-33 | 250 | 326 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-28 | 258 | 326 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.976 | 260 | 326 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-37 | 265 | 325 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 267 | 324 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MDKQGRELVF FHSGDFLRQN PGVSDHTNDS SGDHTRSITK EVDFFSTDRT SELPGTDQEK 60 RISTIGSSSL VDSSINTGLN LLTSNSGISI IANVKNPDNN ELSGLQGELE RLHDENKKLR 120 SLLDQITKSY RDLQAQLIMA TQKQTQGNRI EQKGELNDTP GSIMSAQHLM DPRPRPSVTL 180 DVNDPSVSDD KTQEVLVSST NTVGTKSQML GKRASMEDGL DQTSQSWGSS KSPKLEHEKP 240 DEQTPEVPFR KARVSVRARS DAPLISDGCQ WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR 300 KQVQRCAEDK TILITTYEGN HNHPLPPAAT AMASTTSAAA AMLLSGSTTS KEGLSSSSSF 360 YPSFPYASTM ATLSASAPFP TITLDLTQGP NTTMPFHRTS PSPATFPLPL HGFPQLLGHP 420 MYASPKLPAI PSVQLGQRHA SMVETVTAAI ASDPNFTAAL AAAISTFMGT PRSSDGANNH 480 NAPSGIPGSP QLPQSCTTFS TN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 252 | 328 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G111900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148577 | 0.0 | EF148577.1 Populus trichocarpa x Populus deltoides clone WS0134_F08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440069.1 | 0.0 | probable WRKY transcription factor 47 | ||||
TrEMBL | A0A2K1XTX7 | 0.0 | A0A2K1XTX7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s10750.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10439 | 25 | 41 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01720.1 | 9e-97 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G111900.1 |
Entrez Gene | 7486840 |