PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G111400.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 523aa MW: 57710 Da PI: 7.2146 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.2 | 1.9e-15 | 386 | 431 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L++l+P++ K++Ka++L +A++Y+ksLq Potri.014G111400.3 386 HNLSERKRRDRINKKMRALQDLIPNS-----NKVDKASMLGEAIDYLKSLQ 431 9************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.75E-17 | 377 | 435 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-18 | 378 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-17 | 378 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.841 | 381 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-12 | 386 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.1E-18 | 387 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MDDRGHMELV WENGQVLMRV LPSTSSSCTS YTPHPKKNVS EVENNSDGYT TKRPRLGTGD 60 SILGDFPLID DRELAKRDKS SQDDHHPELF SELCETNLNM LLENNENNIY EKNITDAHVV 120 PGYKDANWRP GKASEFAAEV PQLTTASNGQ LYQSFLEQHK ASAPLFHGLP TSKLQQVDSG 180 SDNHSRLQNL SRILRPALPK PSHGSNATRP TSGPGSSRLQ QLKSNTDEPP AGCRNLVESG 240 QMVPTYASKV FKYFNDQQYL MASQIVPIGP IDRSAEASPP DEQSEAVLHN YATTSKRCCD 300 RVFGSTSGSA EKKIKGKPDR GKSIDQLTAT SSICSRGASN DPTSSLERQY EDTEGTAYSS 360 DDLEEEEQVP ARGSAGSKRR RATEIHNLSE RKRRDRINKK MRALQDLIPN SNKVDKASML 420 GEAIDYLKSL QLQVQSSNIP SFRHVWATSW SDATHVGITS AILSFEYRRA FHTLICSDAG 480 HVWSGQYSSG IYALSCLSKF KGYYSLQYIS SQMISNGGLA SS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 378 | 393 | RRRATEIHNLSERKRR |
2 | 389 | 394 | ERKRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.120 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G111400.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147063 | 0.0 | EF147063.1 Populus trichocarpa clone WS01226_P13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320931.2 | 0.0 | transcription factor PIF3 | ||||
TrEMBL | B9I999 | 0.0 | B9I999_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s10700.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 9e-27 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G111400.3 |