PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G111400.1
Common NamePOPTR_0014s10700g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 562aa    MW: 61476.2 Da    PI: 7.4254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G111400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12.1e-15386431555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  Er+RRdriN+++  L++l+P++      K++Ka++L +A++Y+ksLq
  Potri.014G111400.1 386 HNLSERKRRDRINKKMRALQDLIPNS-----NKVDKASMLGEAIDYLKSLQ 431
                         9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.90E-17377435No hitNo description
Gene3DG3DSA:4.10.280.103.2E-19378440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-20378444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841381430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-12386431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MDDRGHMELV WENGQVLMRV LPSTSSSCTS YTPHPKKNVS EVENNSDGYT TKRPRLGTGD  60
SILGDFPLID DRELAKRDKS SQDDHHPELF SELCETNLNM LLENNENNIY EKNITDAHVV  120
PGYKDANWRP GKASEFAAEV PQLTTASNGQ LYQSFLEQHK ASAPLFHGLP TSKLQQVDSG  180
SDNHSRLQNL SRILRPALPK PSHGSNATRP TSGPGSSRLQ QLKSNTDEPP AGCRNLVESG  240
QMVPTYASKV FKYFNDQQYL MASQIVPIGP IDRSAEASPP DEQSEAVLHN YATTSKRCCD  300
RVFGSTSGSA EKKIKGKPDR GKSIDQLTAT SSICSRGASN DPTSSLERQY EDTEGTAYSS  360
DDLEEEEQVP ARGSAGSKRR RATEIHNLSE RKRRDRINKK MRALQDLIPN SNKVDKASML  420
GEAIDYLKSL QLQVQMMSMG TRLCMPLMML PTGMQHIHAP LLAQFSPMGV GMDTRLMQMG  480
VGCSPATFPA SGMFGLPAGQ MLPMSVSQAP FFPLNIGGHS THSSVPMPAM SGVASTPLEF  540
MRSAVFPSSK DIIHSNTSAR K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378393RRRATEIHNLSERKRR
2389394ERKRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.1200.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G111400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470630.0EF147063.1 Populus trichocarpa clone WS01226_P13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320931.20.0transcription factor PIF3
TrEMBLB9I9990.0B9I999_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.12e-34phytochrome interacting factor 3-like 1