PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G108000.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 212aa MW: 24554.6 Da PI: 7.2625 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.5 | 5.8e-45 | 7 | 136 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 p+G+ FhPtdeelv++yL+ k++g ++ ++i+e++++++ePw Lp+ ++k+ ++ e+yfF++r+ kya+++r+nr+t++gyWk tgkd Potri.014G108000.2 7 PVGYGFHPTDEELVTYYLRFKMHGGYEQEVSIIAEANVCDYEPWVLPElsAIKEpNDPECYFFCPRSYKYANSDRANRTTQAGYWKVTGKD 97 79***********************9888899**************953444443555********************************* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 + v++k ++e++ +kktLvfykgr p+g ktdW+mhey+ Potri.014G108000.2 98 RIVKTKtTKEHIATKKTLVFYKGRVPNGIKTDWIMHEYH 136 ***99877888***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-48 | 5 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.504 | 6 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-25 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MNSRPPPVGY GFHPTDEELV TYYLRFKMHG GYEQEVSIIA EANVCDYEPW VLPELSAIKE 60 PNDPECYFFC PRSYKYANSD RANRTTQAGY WKVTGKDRIV KTKTTKEHIA TKKTLVFYKG 120 RVPNGIKTDW IMHEYHPNFS FPNQREFVLC KLKKDPHAIK PTYEEGEASF NVTSDHSENQ 180 NSTECHHPQT FEEGRYLSIP STTGLIAWLR Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-35 | 7 | 154 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-35 | 7 | 154 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-35 | 7 | 154 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-35 | 7 | 154 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-35 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swm_B | 7e-35 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swm_C | 7e-35 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swm_D | 7e-35 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swp_A | 7e-35 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swp_B | 7e-35 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swp_C | 7e-35 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swp_D | 7e-35 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
4dul_A | 8e-35 | 7 | 154 | 18 | 164 | NAC domain-containing protein 19 |
4dul_B | 8e-35 | 7 | 154 | 18 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G108000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440064.1 | 1e-137 | protein NTM1-like 9 isoform X5 | ||||
TrEMBL | B9I965 | 1e-145 | B9I965_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s10360.1 | 1e-146 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 4e-53 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G108000.2 |