PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.014G107900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 275aa MW: 31847.7 Da PI: 4.9415 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141.5 | 4.9e-44 | 7 | 136 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 p+G+ FhPtdeelv++yL+ k+ g ++ ++i+e++++++ePw Lp+ ++k+ ++ e+yfF++r+ kya+++r+nr+t++gyWk tgkd Potri.014G107900.1 7 PVGYGFHPTDEELVTYYLRLKMLGVCEQEVSAIAEANVCDYEPWVLPElsAIKEpNDPECYFFCPRSYKYANSDRANRTTQAGYWKVTGKD 97 79**********************99888899**************953444443555********************************* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 + v++k ++e++ +kktLvfy+gr p+g kt+W+mhey+ Potri.014G107900.1 98 RIVKTKtTKEHIATKKTLVFYEGRVPNGIKTNWIMHEYH 136 ***99877888***************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-48 | 5 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.216 | 6 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-25 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MHSRPPPVGY GFHPTDEELV TYYLRLKMLG VCEQEVSAIA EANVCDYEPW VLPELSAIKE 60 PNDPECYFFC PRSYKYANSD RANRTTQAGY WKVTGKDRIV KTKTTKEHIA TKKTLVFYEG 120 RVPNGIKTNW IMHEYHPTFS FPNQREFVLC KLKKDPDAIM PTYEEGEASF NVTSDHSENQ 180 NPTEYNHPQT FEEGEYGART ASNFIDNEPE VINSTNNKQC FFLQVISYVI RIYQQLVFLL 240 QEDTYQLQAQ LDSFRGYDEG CYSLNALFPY GNMY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-33 | 7 | 154 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-33 | 7 | 154 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-33 | 7 | 154 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-33 | 7 | 154 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-33 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swm_B | 2e-33 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swm_C | 2e-33 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swm_D | 2e-33 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swp_A | 2e-33 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swp_B | 2e-33 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swp_C | 2e-33 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
3swp_D | 2e-33 | 7 | 154 | 21 | 167 | NAC domain-containing protein 19 |
4dul_A | 2e-33 | 7 | 154 | 18 | 164 | NAC domain-containing protein 19 |
4dul_B | 2e-33 | 7 | 154 | 18 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.014G107900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440064.1 | 1e-154 | protein NTM1-like 9 isoform X5 | ||||
Swissprot | F4JN35 | 5e-52 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | A0A3N7G157 | 1e-153 | A0A3N7G157_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s10330.1 | 1e-159 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 | Representative plant | OGRP9281 | 3 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.1 | 2e-54 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.014G107900.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|