PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G107700.2
Common NamePOPTR_0014s10330g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 246aa    MW: 28503.5 Da    PI: 4.6175
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G107700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.98.7e-4571362127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         p+G+ FhPtdeelv++yL+ k++g   ++ ++i+e++++++ePw Lp+  ++k+ ++ e+yfF++r+ kya+++r+nr+t++gyWk tgkd
  Potri.014G107700.2   7 PVGYGFHPTDEELVTYYLRFKMHGGYEQEVSIIAEANVCDYEPWVLPElsAIKEpNDPECYFFCPRSYKYANSDRANRTTQAGYWKVTGKD 97 
                         79***********************9888899**************953444443555********************************* PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         + v++k ++e++ +kktLvfy+gr p+g kt+W+mhey+
  Potri.014G107700.2  98 RIVKTKtTKEHIATKKTLVFYEGRVPNGIKTNWIMHEYH 136
                         ***99877888***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-485154IPR003441NAC domain
PROSITE profilePS5100547.6126155IPR003441NAC domain
PfamPF023653.3E-257136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MNSRPPPVGY GFHPTDEELV TYYLRFKMHG GYEQEVSIIA EANVCDYEPW VLPELSAIKE  60
PNDPECYFFC PRSYKYANSD RANRTTQAGY WKVTGKDRIV KTKTTKEHIA TKKTLVFYEG  120
RVPNGIKTNW IMHEYHPNFS FPNQREFVLC KLKKDPDAIM PTYEEGEASF NVTSDHFENQ  180
NPTEYNHPQT FEEGEYGAWT ASNFTNDEPE DDTYQFQAQL DSLRGYDEGC YSLDSALKFP  240
YGDIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-35715421167NAC domain-containing protein 19
3swm_B6e-35715421167NAC domain-containing protein 19
3swm_C6e-35715421167NAC domain-containing protein 19
3swm_D6e-35715421167NAC domain-containing protein 19
3swp_A6e-35715421167NAC domain-containing protein 19
3swp_B6e-35715421167NAC domain-containing protein 19
3swp_C6e-35715421167NAC domain-containing protein 19
3swp_D6e-35715421167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}.
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G107700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440064.11e-180protein NTM1-like 9 isoform X5
SwissprotF4JN353e-51NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A3N7G1571e-179A0A3N7G157_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10330.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-53NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]