PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G107600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 166aa    MW: 19490.2 Da    PI: 7.0719
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G107600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.22.7e-3931322128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         p+G+rFhPt+ee++++yL  k++g +  ++  i e+ ++y+++PwdLp  + ++++++ wyfF+++d k +++kr nr+tk+g Wk tgk 
  Potri.014G107600.1   3 PVGYRFHPTEEEIIDHYLSCKLNGLDSLVDAYIGEIdHLYQWDPWDLPdfAVIQSNDRVWYFFCRHDYKFPNSKRVNRTTKNGNWKLTGKV 93 
                         89************************888777****669********96448888999********************************* PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++++ ++e++g+kk Lvf   + p+++kt+Wv+he+++
  Potri.014G107600.1  94 RNITRRgTNEVIGTKKNLVFL-HKCPDSKKTRWVIHEFQA 132
                         *****977788*********9.788999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.692153IPR003441NAC domain
SuperFamilySSF1019411.11E-383139IPR003441NAC domain
PfamPF023653.3E-223131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEPVGYRFHP TEEEIIDHYL SCKLNGLDSL VDAYIGEIDH LYQWDPWDLP DFAVIQSNDR  60
VWYFFCRHDY KFPNSKRVNR TTKNGNWKLT GKVRNITRRG TNEVIGTKKN LVFLHKCPDS  120
KKTRWVIHEF QAKTPPPDEG LRLDRCVCVE EFECWSSMSC FDGIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-30313116139Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G107600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440602.11e-102NAC domain-containing protein 40
SwissprotQ9SCK68e-34NAC62_ARATH; NAC domain-containing protein 62
TrEMBLA0A3N7FYL31e-101A0A3N7FYL3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10320.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14584713
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.37e-37NAC transcription factor-like 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]