PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G100800.1 | ||||||||
Common Name | POPTR_0014s09630g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 30743 Da PI: 10.1679 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl Potri.014G100800.1 14 RGPWTPREDTLLTKYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l Potri.014G100800.1 67 RGNITPDEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.392 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.73E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.663 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.66E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGPWTPR EDTLLTKYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPDEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLVKRLRSQG 120 ITDPGTHRKL AEPGEREVKR RRSNKNTSNK KQNKSKAKLI LPAEKHKVHL PKPVRFTSLP 180 LPRNDSFESN TITISPSQGR DQGSFGTGDS FLVGDNDRYG LVNGSDLECQ SPVPTTNTLE 240 KLYEEYLQLL EIDDRQDQVL LDSFADSLLV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in anthers (PubMed:24319076, PubMed:25053018). Expressed in pollen grains and mature seeds (PubMed:25053018). Expressed in roots and vasculature of leaves (PubMed:24319076). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor involved in the negative regulation of flavonol biosynthesis. Represses the early phenylpropanoid genes, phenylalanine ammonia-lyase (PAL), cinnamate 4-hydroxylase (C4H) and 4-coumarate-CoA ligase (4CL), as well as the flavonoid-specific genes, flavonoid 3'-hydroxylase (F3'H) and dihydroflavonol 4-reductase (DFR) (PubMed:24319076). Plays a role in seed germination inhibition. Negatively regulates the expression of the abscisic acid (ABA) signaling transcription factor ABI5 in seeds (PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G100800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and osmotic stress (PubMed:25053018). Induced by salt stress (PubMed:24319076, PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320876.1 | 0.0 | myb-related protein 308 | ||||
Swissprot | P81393 | 2e-66 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | Q42379 | 4e-66 | MYB7_ARATH; Transcription factor MYB7 | ||||
TrEMBL | B9I900 | 0.0 | B9I900_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s09630.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 9e-68 | myb domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G100800.1 |
Entrez Gene | 7486782 |