PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G100100.1 | ||||||||
Common Name | POPTR_0014s09560g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 545aa MW: 60518.2 Da PI: 8.7359 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.4 | 5.5e-18 | 8 | 70 | 34 | 98 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++el+v+++r Potri.014G100100.1 8 QELAARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGDNGELRVGLRR 70 58999*********************************************..3489999***998 PP | |||||||
2 | Auxin_resp | 93.1 | 4.5e-31 | 96 | 175 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t++ F v+Y+Pr+ ++++ ++k+++a+k+ +svGmRfkm+fe+ed +err++Gt+vgv d++p +W++S WrsLk Potri.014G100100.1 96 ASHAVLTHTLFVVYYKPRT--NQYIIGLNKYLEAVKNGFSVGMRFKMRFEGEDTPERRFTGTIVGVGDISP-EWSGSIWRSLK 175 689999************6..99**********************************************99.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 3.3E-4 | 1 | 72 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.633 | 1 | 72 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-24 | 2 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.45E-22 | 2 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.1E-16 | 7 | 70 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.39E-13 | 8 | 70 | No hit | No description |
Pfam | PF06507 | 3.0E-29 | 96 | 175 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.0E-13 | 407 | 517 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.92E-12 | 423 | 505 | No hit | No description |
PROSITE profile | PS51745 | 24.937 | 429 | 521 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MSQATPTQEL AARDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGD 60 NGELRVGLRR VARQQCSIPS SVISSQSMHL GVLATASHAV LTHTLFVVYY KPRTNQYIIG 120 LNKYLEAVKN GFSVGMRFKM RFEGEDTPER RFTGTIVGVG DISPEWSGSI WRSLKIQWDE 180 PATIQRPERV SPWDIEPFAA PASPNLTQQV VKSKRPRSVD IPTSEITTNP AASAFWYHGP 240 TQSRELVQRG SITEVQSSES HVWSMRQKEI DSNLNNNGSC NSRARPEGIW PSSSHMNVSL 300 NFFPDSAADN KCAKTQSIIS GFASSISRQS NGLINEQVER GRKFENSVGC RLFGIDLTSN 360 SGIAAVPEKE PAYPIVDYNG TQGLVPASSE AEKAQTMDVS MSSKEQKQVV PDTLAKESQS 420 KQGSTTSTRT RTKVQMQGVA VGRALDLTVL KGYKDLINEL EKMFETGGEL STREKWAVVF 480 TDNEGDMMLV GDDPWPEFCK MVKKIFIYSS EEVKKMSTRC KLPASSFEGE GTVVSMESEH 540 KSDA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 3e-93 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
4ldw_A | 3e-93 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
4ldw_B | 3e-93 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.6813 | 0.0 | catkin |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G100100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT164698 | 0.0 | KT164698.1 Populus tomentosa clone Potom.002G07206 auxin response factor 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375372.1 | 0.0 | auxin response factor 18 isoform X2 | ||||
Refseq | XP_024440876.1 | 0.0 | auxin response factor 18 isoform X1 | ||||
Swissprot | Q9XED8 | 1e-166 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A2K1XT90 | 0.0 | A0A2K1XT90_POPTR; Auxin response factor | ||||
STRING | POPTR_0014s09560.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 1e-166 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G100100.1 |
Entrez Gene | 18105244 |