PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G099900.1
Common NamePOPTR_0014s09540g, TINYL14
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 199aa    MW: 21898.3 Da    PI: 4.789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G099900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-183888155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Potri.014G099900.1 38 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 88
                        68*****887.**********843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-123888IPR001471AP2/ERF domain
PROSITE profilePS5103223.0373996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-303997IPR001471AP2/ERF domain
SMARTSM003809.2E-3439102IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-213998IPR016177DNA-binding domain
CDDcd000182.96E-304097No hitNo description
PRINTSPR003672.8E-124051IPR001471AP2/ERF domain
PRINTSPR003672.8E-127898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEQPPYTEDD PTTNSPEAAT AKTHQNSETP RGSGTRNPVY RGVRKRRWGK WVSEIREPRK  60
KSRIWLGSFP VPEMAAKAYD VAAYCLKGCK AQLNFPDEVD DLPRPSTCTA RDIQAAAAKA  120
AHSVLLPTKK SIETNSDNSV DGEVADDDFW GEIELPELLT SNSGCCWNSC GWSTTFASDS  180
STWQQDGEGL PQFMACLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1831100676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G099900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559330.0EF155933.1 Populus trichocarpa TINY-like protein (TINYL14) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320204.11e-147ethylene-responsive transcription factor ERF023
SwissprotQ1ECI26e-62ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA9PL831e-146A9PL83_POPTR; TINY-like protein
STRINGPOPTR_0014s09540.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-63ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]