PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G096200.1
Common NamePOPTR_0014s09190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 366aa    MW: 41179.5 Da    PI: 4.8801
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G096200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.62.9e-29128189159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+ed +++e+tY+g+H+++
  Potri.014G096200.1 128 LDDGYSWRKYGQKDILGANFPRGYYRCTHRhsqGCLATKQVQRSDEDHSIFEVTYRGRHTCN 189
                         59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.158123191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-29125190IPR003657WRKY domain
SuperFamilySSF1182903.92E-26127190IPR003657WRKY domain
SMARTSM007743.1E-42128190IPR003657WRKY domain
PfamPF031067.2E-27129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MELSMEWEHK TLISELTQGK ELAKQLSNHL NPSASLEARQ FLVDKILSSY EKALSMLNWG  60
ALAADQPKPT IGTVEPLHSF ANSSPRSEVS DQDCKEECNK DVYKKRKIQP RWTEQVKDCS  120
GTGLEGPLDD GYSWRKYGQK DILGANFPRG YYRCTHRHSQ GCLATKQVQR SDEDHSIFEV  180
TYRGRHTCNQ ASPSPVASPS PKNDCSKQSK YHRKQQQQRQ EKPKPTEEIF VNFGSDIVQV  240
KNEDLGSKDD IFPSFSFPCT SFGNENEENN IFTESMMENN FLGSFSPTFI SPATSESNYF  300
SMSPCHMNSF GIGYQNVQTP ESELTTEIIS APTSVTNSPI GDFDISIDNV DFDTTFPFDN  360
PDFFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-191281861474Disease resistance protein RRS1
5w3x_D3e-191281861474Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G096200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774260.0GQ377426.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320852.30.0probable WRKY transcription factor 46
TrEMBLA0A2K1XT150.0A0A2K1XT15_POPTR; Uncharacterized protein
STRINGPOPTR_0014s09190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-51WRKY family protein