PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G079300.2
Common NamePOPTR_0014s07520g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 476aa    MW: 53196.5 Da    PI: 8.3178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G079300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-173379148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W +eEd+l+ ++v+++G++ W+ +a+++  gR +kqc++rw+++l
  Potri.014G079300.2 33 KGPWKKEEDDLIRELVEKHGNKKWSQVAKHLT-GRIGKQCRERWHNHL 79
                        79*****************************9.*************97 PP
2Myb_DNA-binding51.13e-1685127145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         r +WT+eE+ +l++a+  +G++ W+ Ia+ +  gRt++++k++w+
  Potri.014G079300.2  85 RTPWTKEEEAILIKAHGAYGNK-WAEIAKLLH-GRTENSIKNHWN 127
                         789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-11840IPR009057Homeodomain-like
PROSITE profilePS500904.298827IPR017877Myb-like domain
PROSITE profilePS5129430.9432883IPR017930Myb domain
SuperFamilySSF466891.98E-3030126IPR009057Homeodomain-like
SMARTSM007173.4E-163281IPR001005SANT/Myb domain
CDDcd001674.20E-143579No hitNo description
PfamPF139211.1E-183693No hitNo description
Gene3DG3DSA:1.10.10.603.1E-274186IPR009057Homeodomain-like
PROSITE profilePS5129420.11484134IPR017930Myb domain
SMARTSM007174.7E-1684132IPR001005SANT/Myb domain
CDDcd001671.42E-1187127No hitNo description
Gene3DG3DSA:1.10.10.609.9E-2387134IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MKLISLAAEC VPDRTDVQCL HRWQKVLDPK LVKGPWKKEE DDLIRELVEK HGNKKWSQVA  60
KHLTGRIGKQ CRERWHNHLN PDINRTPWTK EEEAILIKAH GAYGNKWAEI AKLLHGRTEN  120
SIKNHWNCSV RKRIESYPAR GLDFYSYKTK ADGKKLEVGK QRNDRGVNLC SNVEPCSLDL  180
VLGNVGRREG QLKTSDNEIC KEWNDSAKST GRTIGTKATD TCVLSSQDCR ESASSAYTSE  240
STDHSSVNQP GKICDISFGS LMRSPYSQER THETTNTINS LPSEALSPSL DLSLSTPFSA  300
HGYDETMDEH EKNRGAGGPN TTDKLHRGLC YESLQLKDLN VFLETGSFPS SDCYIRTVGG  360
PGSFSTPISR NRVSPDCSSP ESRLRSKARS FKSTPSIIRK RSSITLRQAG SSDKDDNGLR  420
SLGSCSSDKD DDDDDVDLLN KKQLFLSPPK SKKLETPEEM KSVEKRLEYA FNIEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-57613431159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-57613431159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G079300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320778.30.0transcription factor MYB3R-2
TrEMBLA0A2K1XS590.0A0A2K1XS59_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07520.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-64Homeodomain-like protein