PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G079300.1
Common NamePOPTR_0014s07520g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 542aa    MW: 60793.1 Da    PI: 9.0002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G079300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-184893248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        ++WT eEd++l+davk++ +++Wk+Ia++++  Rt+ qc +rwqk+l
  Potri.014G079300.1 48 KKWTGEEDKILADAVKRYNSKNWKKIAECVP-DRTDVQCLHRWQKVL 93
                        69*****************************.************986 PP
2Myb_DNA-binding53.74.7e-1799145148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W +eEd+l+ ++v+++G++ W+ +a+++  gR +kqc++rw+++l
  Potri.014G079300.1  99 KGPWKKEEDDLIRELVEKHGNKKWSQVAKHLT-GRIGKQCRERWHNHL 145
                         79*****************************9.*************97 PP
3Myb_DNA-binding50.93.5e-16151193145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         r +WT+eE+ +l++a+  +G++ W+ Ia+ +  gRt++++k++w+
  Potri.014G079300.1 151 RTPWTKEEEAILIKAHGAYGNK-WAEIAKLLH-GRTENSIKNHWN 193
                         789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0744293IPR017930Myb domain
SMARTSM007177.9E-164695IPR001005SANT/Myb domain
PfamPF002491.6E-164893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2149105IPR009057Homeodomain-like
SuperFamilySSF466892.97E-1749109IPR009057Homeodomain-like
CDDcd001671.20E-134993No hitNo description
PROSITE profilePS5129430.94394149IPR017930Myb domain
SuperFamilySSF466892.12E-3096192IPR009057Homeodomain-like
SMARTSM007173.4E-1698147IPR001005SANT/Myb domain
CDDcd001671.10E-13101145No hitNo description
PfamPF139211.7E-18102159No hitNo description
Gene3DG3DSA:1.10.10.603.9E-27106153IPR009057Homeodomain-like
SMARTSM007174.7E-16150198IPR001005SANT/Myb domain
PROSITE profilePS5129420.114150200IPR017930Myb domain
CDDcd001673.60E-11153193No hitNo description
Gene3DG3DSA:1.10.10.602.3E-22154200IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MVEEVKEINS NSKTKGLVYW TGLVPHGGIR NAIQNQQGRM TGPTRRSKKW TGEEDKILAD  60
AVKRYNSKNW KKIAECVPDR TDVQCLHRWQ KVLDPKLVKG PWKKEEDDLI RELVEKHGNK  120
KWSQVAKHLT GRIGKQCRER WHNHLNPDIN RTPWTKEEEA ILIKAHGAYG NKWAEIAKLL  180
HGRTENSIKN HWNCSVRKRI ESYPARGLDF YSYKTKADGK KLEVGKQRND RGVNLCSNVE  240
PCSLDLVLGN VGRREGQLKT SDNEICKEWN DSAKSTGRTI GTKATDTCVL SSQDCRESAS  300
SAYTSESTDH SSVNQPGKIC DISFGSLMRS PYSQERTHET TNTINSLPSE ALSPSLDLSL  360
STPFSAHGYD ETMDEHEKNR GAGGPNTTDK LHRGLCYESL QLKDLNVFLE TGSFPSSDCY  420
IRTVGGPGSF STPISRNRVS PDCSSPESRL RSKARSFKST PSIIRKRSSI TLRQAGSSDK  480
DDNGLRSLGS CSSDKDDDDD DVDLLNKKQL FLSPPKSKKL ETPEEMKSVE KRLEYAFNIE  540
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-63492008159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-63492008159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G079300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320778.30.0transcription factor MYB3R-2
TrEMBLA0A2K1XS630.0A0A2K1XS63_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149761314
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.15e-82Homeodomain-like protein