PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G078500.1
Common NamePOPTR_0014s07450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 397aa    MW: 42919.2 Da    PI: 10.1254
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G078500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.41e-371272302106
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                         ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++    +   +  + +s++a+
  Potri.014G078500.1 127 PPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTTSSSAE 215
                         6899************************************************************8888855531..222222222222333 PP

                 TCP  92 ksaakskksqksaas 106
                         +++++ kk++k++a+
  Potri.014G078500.1 216 PDEPNAKKKRKRPAN 230
                         333333333332222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-31132226IPR005333Transcription factor, TCP
PROSITE profilePS5136927.141133187IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGPTIYHHLL CPTLFGDWQV QTLLCIDPSI LTFFFGFLFF FLSDRPLLVA PVQKQELGED  60
ASMTTADLRI NSGELRNIRG GPTNKKNYND MSAAPKEEPC TEDRSPTPPL AVVPFAAIPM  120
PLTTVTPPKR ASTKDRHTKV EGRGRRIRMP ATCAARIFQL TRELGHKSDG ETIRWLLEHA  180
EPAIIAATGT GTVPAIAMSV NGTLKIPTTT SSSAEPDEPN AKKKRKRPAN SEYVDVNDSV  240
SVSASLAPIT TRPRQPPQPQ AQQPVAAVPQ GLVPMWAIPS NTVVPGAFFM VPSMPGPFNQ  300
PQIFTFPAAA SPLINISPRP ISSFVSSMQS NIAVALPVSG SKPGKGISRT APSSSSAHTI  360
RTPSTTTNST PHMLRDFSLE IYDKQELQFM SRSSKQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G078500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441268.10.0transcription factor TCP9
SwissprotO646473e-97TCP9_ARATH; Transcription factor TCP9
TrEMBLB9IC900.0B9IC90_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.19e-87TCP family protein