PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G076100.1 | ||||||||
Common Name | POPTR_0014s07220g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 649aa MW: 72309.7 Da PI: 4.2666 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.9 | 1.1e-28 | 17 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +Gf+F+P+deel+ +yL +k++g+ +e ++ v+++++ePwdLp k +k ++ wyf ++rd + gk ++r+tk+gyWk t ++ Potri.014G076100.1 17 EQGFKFDPSDEELIRKYLVPKTRGDIMEG-LPMAVVNLCEHEPWDLPgKsIIKLtGQVAWYFLCPRDLR---GKVHRRKTKAGYWKPTSQQ 103 68***********************9988.569**************644333324559******9985...7789999************ PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++++ +++++g+ +tL fy +k ++t W++ e+ l Potri.014G076100.1 104 KSITAEhTNKKIGVVRTLRFY----EKQVRTGWMIYEFDL 139 ****9877888**********....45679*******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-31 | 13 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.585 | 16 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-19 | 18 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MDDYFSSVLP ILLLLMEQGF KFDPSDEELI RKYLVPKTRG DIMEGLPMAV VNLCEHEPWD 60 LPGKSIIKLT GQVAWYFLCP RDLRGKVHRR KTKAGYWKPT SQQKSITAEH TNKKIGVVRT 120 LRFYEKQVRT GWMIYEFDLI AESSQFKKGQ FVLCKLEFDS KGEKSKKGEQ SHHIAPVSHS 180 EVEPSQSMDS DSENINPSEM AMRYSPCDES ELSHHAGSHF GNQNPSELMN NSARQLSELS 240 HHMASDSENN LMPNLVYDGS GSSHSTVFNC EDLYWNQPTV DSAYNGSESL YMAFDSENQN 300 PNELPTVDNS ASNVSKNHGM AFGLANHNPN VSLTVDNSTS NVSESHHMAL VLENQNLNNS 360 ISILTCENSL MASRGLENQE PFFPPCSLIN QSTYDKSESS SLMDFDFENQ NLVKEFDISA 420 FCEGVWSNTT ATPPDFGNQN PCKKTDMSTL EEGYSSYFNS SSSDNDLADV ALPEQVSPGL 480 QAEIEGCFEQ ENIPNPALVQ LPAYMEESHS FRGFGTLENQ EPFFPPCSFI NQSTYDKSES 540 SSLMNFDFGN QNLVKEFDIS AFGEGVWSNT TATPPDFGNQ NPCKKTDMST LEEGYSSYFN 600 SSSSDNDLAD VALPEQVSPG PQAEIEGCFE QENIPNPALV QLPFLGFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-19 | 10 | 156 | 11 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-19 | 10 | 156 | 11 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-19 | 10 | 156 | 11 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-19 | 10 | 156 | 11 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swm_B | 3e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swm_C | 3e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swm_D | 3e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swp_A | 3e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swp_B | 3e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swp_C | 3e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
3swp_D | 3e-19 | 10 | 156 | 14 | 165 | NAC domain-containing protein 19 |
4dul_A | 3e-19 | 10 | 156 | 11 | 162 | NAC domain-containing protein 19 |
4dul_B | 3e-19 | 10 | 156 | 11 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G076100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182673 | 8e-33 | AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440231.1 | 0.0 | NAC domain-containing protein 45-like isoform X1 | ||||
TrEMBL | A0A2K1XRZ3 | 0.0 | A0A2K1XRZ3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s07220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19008 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 1e-26 | NAC domain containing protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G076100.1 |
Entrez Gene | 7464897 |