PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G076000.3

Common Name

POPTR_0014s07210g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 202aa MW: 23022.9 Da PI: 7.1259

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G076000.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.9	6.4e-43	12	140	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 p+G+ FhPtdeel++++Lk k+ g ++ +i+ev+++++ePw+Lp ++++++++ wyfFs+r+ ky++ k+++r+tk+gyWk tg+d+ Potri.014G076000.3 12 PKGYGFHPTDEELINHFLKLKMMGGYDHEVAIIAEVNVCNSEPWELPglSEIQSNDTVWYFFSPRNYKYSNRKQAKRTTKAGYWKLTGNDR 102 89*******************999888799***********6449999999****************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 + + +ge++ kk+Lvfykgr p+ ++t+W+mhey+ Potri.014G076000.3 103 IIRVLsTGEEIAKKKSLVFYKGRVPNIVRTNWIMHEYN 140 9877658999*************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-48	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	48.134	11	159	IPR003441	NAC domain
Pfam	PF02365	9.2E-23	12	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MTSSTVPFPS APKGYGFHPT DEELINHFLK LKMMGGYDHE VAIIAEVNVC NSEPWELPGL 60 SEIQSNDTVW YFFSPRNYKY SNRKQAKRTT KAGYWKLTGN DRIIRVLSTG EEIAKKKSLV 120 FYKGRVPNIV RTNWIMHEYN PTFNFHNQKD FVLCKLKKNS DDKLTCEEGG SSSNMASDFP 180 NNVTEEDHLE AFLGVDGGYY N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-35	10	160	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-35	10	160	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-35	10	160	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-35	10	160	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	9e-35	10	160	19	169	NAC domain-containing protein 19
3swm_B	9e-35	10	160	19	169	NAC domain-containing protein 19
3swm_C	9e-35	10	160	19	169	NAC domain-containing protein 19
3swm_D	9e-35	10	160	19	169	NAC domain-containing protein 19
3swp_A	9e-35	10	160	19	169	NAC domain-containing protein 19
3swp_B	9e-35	10	160	19	169	NAC domain-containing protein 19
3swp_C	9e-35	10	160	19	169	NAC domain-containing protein 19
3swp_D	9e-35	10	160	19	169	NAC domain-containing protein 19
4dul_A	8e-35	10	160	16	166	NAC domain-containing protein 19
4dul_B	8e-35	10	160	16	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G076000.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024440276.1	1e-151	protein NTM1-like 9 isoform X2
TrEMBL	A0A2K1XRY4	1e-150	A0A2K1XRY4_POPTR; Uncharacterized protein
STRING	POPTR_0014s07210.1	1e-145	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-48	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Potri.014G076000.3
Entrez Gene	7496927