PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G076000.1 | ||||||||
Common Name | POPTR_0014s07210g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 222aa MW: 25165.5 Da PI: 7.1106 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.5 | 8.5e-43 | 12 | 140 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 p+G+ FhPtdeel++++Lk k+ g ++ +i+ev+++++ePw+Lp ++++++++ wyfFs+r+ ky++ k+++r+tk+gyWk tg+d+ Potri.014G076000.1 12 PKGYGFHPTDEELINHFLKLKMMGGYDHEVAIIAEVNVCNSEPWELPglSEIQSNDTVWYFFSPRNYKYSNRKQAKRTTKAGYWKLTGNDR 102 89*********************999888799***************6449999999********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 + + +ge++ kk+Lvfykgr p+ ++t+W+mhey+ Potri.014G076000.1 103 IIRVLsTGEEIAKKKSLVFYKGRVPNIVRTNWIMHEYN 140 9877658999***************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-47 | 4 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.981 | 11 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-22 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MTSSTVPFPS APKGYGFHPT DEELINHFLK LKMMGGYDHE VAIIAEVNVC NSEPWELPGL 60 SEIQSNDTVW YFFSPRNYKY SNRKQAKRTT KAGYWKLTGN DRIIRVLSTG EEIAKKKSLV 120 FYKGRVPNIV RTNWIMHEYN PTFNFHNQIL EPAFSSPPGL CVLVKYVQKD FVLCKLKKNS 180 DDKLTCEEGG SSSNMASDFP NNVTEEDHLE AFLGVDGGYY N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-33 | 10 | 180 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-33 | 10 | 180 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-33 | 10 | 180 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-33 | 10 | 180 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-33 | 10 | 180 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-33 | 10 | 180 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-33 | 10 | 180 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-33 | 10 | 180 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-33 | 10 | 180 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-33 | 10 | 180 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-33 | 10 | 180 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-33 | 10 | 180 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-33 | 10 | 180 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-33 | 10 | 180 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G076000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320092.2 | 1e-167 | protein NTM1-like 9 isoform X1 | ||||
TrEMBL | B9IC64 | 1e-165 | B9IC64_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s07210.1 | 1e-166 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 | Representative plant | OGRP9281 | 3 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 6e-47 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G076000.1 |
Entrez Gene | 7496927 |