PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G075900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 595aa    MW: 66605.3 Da    PI: 4.3155
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G075900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.47.4e-2921242128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +Gf+F+P+deel+ +yL +k++g+ +e    ++ v+++++ePwdLp k  +k  ++  wyf ++rd +   gk ++r+tk+gyWk t ++
  Potri.014G075900.1   2 EQGFKFDPSDEELIRKYLVPKTRGDIMEG-LPMAVVNLCEHEPWDLPgKsIIKLaGQVTWYFLCPRDLR---GKVHRRKTKAGYWKLTCQQ 88 
                         68***********************9988.569**************644333325559******9985...7789999************ PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+++++ +++++g+ +tL fy    ++ ++t W+m e+ l
  Potri.014G075900.1  89 KSITAEgTTTKIGVMRTLRFY----ENEVRTGWMMYEFDL 124
                         *****866778**********....45579********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.171144IPR003441NAC domain
SuperFamilySSF1019417.32E-323142IPR003441NAC domain
PfamPF023651.4E-203124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MEQGFKFDPS DEELIRKYLV PKTRGDIMEG LPMAVVNLCE HEPWDLPGKS IIKLAGQVTW  60
YFLCPRDLRG KVHRRKTKAG YWKLTCQQKS ITAEGTTTKI GVMRTLRFYE NEVRTGWMMY  120
EFDLITNSSQ FKKGQYVLCK LEINSKGEKS KKGEQSHHIA PVSHSEVEPS QSMDSDSENI  180
NPSEMAMRYS PCDESELSHH AGSHFGNQNP SELMNNSARQ LSELSHHMAS DSENNLMPNL  240
VYDGSGSSHS TVFNCEELYW NQPTVDSAYS PYMAFDSENQ NPNEILTVDN SASNVSRNDG  300
MAFGLANHNP NVSLTVDNST SNVSESHHMA LVLENQNLNN SLSILTCENS LMASRGLENQ  360
EPFFPPCSFI NQSTYDKSES SSLMDFDFEN QNLVKEFDIS AFGEGVWSNT TATPPEFLNQ  420
NTCKKTDMST LEEGYSSYFK SSFSDNDLPD VALPEVSPGL QAEIEGCFEQ ENIPNPALVQ  480
LPAYMEESHS FRGFGTLENQ EPFFPPCSFI NQSTYDKSES SSLMNFDFGN QNLVKEFDIS  540
AFGEGVWSNT TATPPDFGNQ NPCKKSDMST LEEGYSSYFN SSSSDNDLAD VALPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-18414123165NAC domain-containing protein 19
3swm_B1e-18414123165NAC domain-containing protein 19
3swm_C1e-18414123165NAC domain-containing protein 19
3swm_D1e-18414123165NAC domain-containing protein 19
3swp_A1e-18414123165NAC domain-containing protein 19
3swp_B1e-18414123165NAC domain-containing protein 19
3swp_C1e-18414123165NAC domain-containing protein 19
3swp_D1e-18414123165NAC domain-containing protein 19
3ulx_A1e-18415118174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G075900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826732e-36AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440274.10.0NAC domain-containing protein 45 isoform X2
TrEMBLA0A2K1XRZ20.0A0A2K1XRZ2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1900836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-26NAC domain containing protein 71