PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G066500.3
Common NamePOPTR_0014s06190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 413aa    MW: 45525.3 Da    PI: 9.6149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G066500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-10297330540
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STC CS
                 HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsK 40 
                         hn+ Er+RRd+iN+++ +L++l+P+ +   + +K+s 
  Potri.014G066500.3 297 HNQSERKRRDKINQRMKTLQKLVPSsS---KVRKVSS 330
                         9************************44...8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-9290330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.172292344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-10296328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-8297330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-6297320No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSHQCVPSWE VDDNRTTAPK LSLRFHSNSS APDMPMLDYE VAELTWENGQ IAMHGLGPPR  60
VPAKPIASTS PSKYTWDKPR ASGTLESIVN QATCVPQCNK ATFDNSTGSD HDLIPWFNHH  120
KASASATMTM DALVPCSNRS DQGRTTHVID SGPAGLGTCV VGCSTRVGSC SAPAATQDED  180
GLLTGKRARV ARVPVPPEWS RDQSVNHSAT FGKKDSQQMT VDSCEREFGV GFTSTSFGSQ  240
ENTSSGTNPC TKTLTADEND SVCHSRPQRE AGKEDDKKKG NGKSSVSTKR SRAAAIHNQS  300
ERKRRDKINQ RMKTLQKLVP SSSKVRKVSS VTFQCITKKL FKFYPCAFMA LHHYILYTYQ  360
SCLIINMHPL VKSGNSHQLL WSVLGFFFLK KNNYGKIISQ PRQYHTPRPS YF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305ERKRRD
2301306RKRRDK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G066500.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320711.20.0transcription factor UNE10
SwissprotQ8GZ383e-78UNE10_ARATH; Transcription factor UNE10
TrEMBLB9IBW90.0B9IBW9_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06190.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]