PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G066100.2
Common NamePOPTR_0014s06150g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 318aa    MW: 35655 Da    PI: 8.4035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G066100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031426123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC+ C ksFs+   L  H+r+H
  Potri.014G066100.2  4 HKCKLCFKSFSNGRALGGHMRSH 26
                        79********************9 PP
2zf-C2H214.50.0001172194123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k+F++   L  H  +H
  Potri.014G066100.2 172 YKCETCNKVFKSYQALGGHRASH 194
                         9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-5330No hitNo description
PfamPF139124.6E-6426IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762431IPR007087Zinc finger, C2H2
SMARTSM003550.038426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139121.7E-11172196IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492172199IPR007087Zinc finger, C2H2
SMARTSM003550.01172194IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.24E-7172194No hitNo description
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SuperFamilySSF576673.24E-7221248No hitNo description
PfamPF139127.5E-10226248IPR007087Zinc finger, C2H2
PROSITE profilePS501578.621226248IPR007087Zinc finger, C2H2
SMARTSM003551.6226248IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280228248IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEKHKCKLCF KSFSNGRALG GHMRSHLLKL PVPPKLEDQF PHIEFCFAAA DAGSVVLQDR  60
ESETESSKNP TRRRSKRTER LLENHHHQYH QQRPRQEQEN NNIVKKLELK KMGTFKAAAE  120
SSSGQEPEPV SSISDTTTEE DVAFCLMMLS RDRWKRKEQE NQEEDRGLEE EYKCETCNKV  180
FKSYQALGGH RASHKKLKVY TPSKEPNLEP TENAGASTSL PEKKIHGCPF CLRVFSSGQA  240
LGGHKRSHVI GVAASSSTPA RSSTKFGDNN LGLIDLNLPA PVDDDDISQA DKLSAVSDAE  300
FVSYIKRSAK LFQRGWD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G066100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440190.10.0zinc finger protein ZAT9 isoform X2
TrEMBLA0A2I4KKY00.0A0A2I4KKY0_POPTR; C2H2 family protein
STRINGPOPTR_0014s06150.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-60C2H2-like zinc finger protein