PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G064600.1
Common NamePOPTR_0013s10770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 123aa    MW: 14836.8 Da    PI: 9.3663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G064600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.65.7e-1144805591
                 NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
                        + +wyfF +rd++y+tg r+nrat++g Wkatg+d++
  Potri.014G064600.1 44 DWQWYFFGPRDRRYHTGARSNRATRQGWWKATGRDRS 80
                        4589******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.2771122IPR003441NAC domain
PfamPF023653.4E-131497IPR003441NAC domain
SuperFamilySSF1019412.22E-2914120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MILEEISSLL EGWFAPTDVE LVLYYLKRKI CEKRFELDII RDSDWQWYFF GPRDRRYHTG  60
ARSNRATRQG WWKATGRDRS RAPRGERTDW KMQEYTLSEE ELRGRANVQD FYALYKLCKK  120
GE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-19812016165NO APICAL MERISTEM PROTEIN
1ut4_B5e-19812016165NO APICAL MERISTEM PROTEIN
1ut7_A5e-19812016165NO APICAL MERISTEM PROTEIN
1ut7_B5e-19812016165NO APICAL MERISTEM PROTEIN
3swm_A6e-19812019168NAC domain-containing protein 19
3swm_B6e-19812019168NAC domain-containing protein 19
3swm_C6e-19812019168NAC domain-containing protein 19
3swm_D6e-19812019168NAC domain-containing protein 19
3swp_A6e-19812019168NAC domain-containing protein 19
3swp_B6e-19812019168NAC domain-containing protein 19
3swp_C6e-19812019168NAC domain-containing protein 19
3swp_D6e-19812019168NAC domain-containing protein 19
4dul_A5e-19812016165NAC domain-containing protein 19
4dul_B5e-19812016165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.119875e-34bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G064600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5132244e-31DQ513224.1 Populus trichocarpa clone 528929 TIR-NBS-LRR-TIR type disease resistance protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011973.14e-64PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9XIC54e-34NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A2K1XRC51e-84A0A2K1XRC5_POPTR; Uncharacterized protein
STRINGPOPTR_0013s10770.15e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.12e-36NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]