PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.014G057800.1 | ||||||||
Common Name | POPTR_0014s05690g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 409aa MW: 45197.9 Da PI: 7.2906 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.1 | 3.8e-41 | 174 | 251 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Potri.014G057800.1 174 RCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVIVLGLEQRFCQQCSRFHVVSEFDDAKRSCRRRLAGHNERRRKSSQ 251 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.0E-35 | 168 | 236 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.376 | 172 | 249 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-38 | 173 | 253 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.6E-32 | 175 | 248 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 409 aa Download sequence Send to blast |
MENGGNKGQE NDHANLPWEI WELNTSRFDL VNSSNNTAAA AADTFFTTTA TSVVESGSSC 60 THPEGTSAHG FLFPYQNSWL YHHSNNNSYQ QLSLYAGDGS NLPPDPHLMC LKLGKRHYFE 120 NSTSNNNHSN HPVSDRHEVG GFSIGKRGKP YYSVGGGGGA HDGPSSSTSV NVPRCQVEGC 180 HVALLNAKDY HRRHKVCEMH SKAPKVIVLG LEQRFCQQCS RFHVVSEFDD AKRSCRRRLA 240 GHNERRRKSS QDPVSRNSSQ EKLMAGRFPY IASPTGCALS LLSSKADSWV SPSDLSSRSS 300 AALRELIAEH RTAILSRQLV LEKHLHHHAM EDLGESQPSS NFLITHQQQV LSEPHNWGRL 360 NDTSTHVTLD LMQAPSSAFG FLSPRGKNKE EEEECSELWS TMEGAHVV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-31 | 166 | 248 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.9396 | 0.0 | bud| catkin |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.014G057800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375256.1 | 0.0 | squamosa promoter-binding-like protein 7 isoform X1 | ||||
TrEMBL | U5FPG5 | 0.0 | U5FPG5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s05690.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G27370.4 | 1e-37 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.014G057800.1 |
Entrez Gene | 18105162 |