PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G057100.1
Common NamePOPTR_0014s05620g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 392aa    MW: 44596 Da    PI: 9.1259
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G057100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3413.5e-13391151799
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          +pkkf++ +g  k  s +  le ++g + ev++   k++g+++l++GWkeF++   L  g  +vF+++++  f  +v +++k
  Potri.014G057100.1  39 GIPKKFVRLYG--KGLSNKALLEVPNGTVSEVEF--FKSDGKIWLQNGWKEFAEHYSLALGSLLVFEYKKSCHF--HVLILDK 115
                         69******998..558999***************..********************************998888..9999987 PP
2B344.72.4e-141522271895
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3  18 lpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         +pk+fa+++ ++ ++  + +l  ++gr+W vk+ +   +++ ++ +++GW++F  +n L++ D++vF+l++  + e+ +k
  Potri.014G057100.1 152 IPKSFAQKYFKNDHG--DAVLCVLDGRTWPVKYFVypGNGKAKTQIRSGWNKFTWDNYLEVSDVCVFELTK--CIEMSFK 227
                         9********766545..69999999********666766666699***********************864..3334333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1914116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-1914115IPR015300DNA-binding pseudobarrel domain
CDDcd100173.68E-1419114No hitNo description
SMARTSM010191.1E-1026116IPR003340B3 DNA binding domain
PfamPF023623.0E-1039115IPR003340B3 DNA binding domain
PROSITE profilePS5086310.37740116IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533135234IPR003340B3 DNA binding domain
SMARTSM010191.6E-7139234IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-16151233IPR015300DNA-binding pseudobarrel domain
PfamPF023629.1E-13151227IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-16152234IPR015300DNA-binding pseudobarrel domain
CDDcd100174.83E-13152232No hitNo description
Gene3DG3DSA:2.40.330.107.6E-6339387IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-5340386IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.104347391IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGSPFKGGNG SFMFNADKPH FFKIFFKKLL LMGSFLYQGI PKKFVRLYGK GLSNKALLEV  60
PNGTVSEVEF FKSDGKIWLQ NGWKEFAEHY SLALGSLLVF EYKKSCHFHV LILDKTTMEI  120
DYSFSMTDGD EEPDLEGEFQ QPRTEETDDD PIPKSFAQKY FKNDHGDAVL CVLDGRTWPV  180
KYFVYPGNGK AKTQIRSGWN KFTWDNYLEV SDVCVFELTK CIEMSFKVIV VRANKDDSHR  240
LAVANQAKPK RSVLIDIDPE FPRDGEDGTS SSHHKYGTKE KGRKSEEDDS LPPEKKIKNS  300
LPHKMANNSR KDAGSGLKTK RLAPLSAIEK EKALRRAYAF KSENPFFFIA IQPAYVCSGA  360
NMSIPFKFAD RYFKEKNGEV ILQVSKDPKL W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G057100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042476.11e-101PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
TrEMBLB9MV040.0B9MV04_POPTR; Uncharacterized protein
STRINGPOPTR_0014s05620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-16B3 family protein