PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G051200.1
Common NamePOPTR_0014s05010g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 344aa    MW: 38131.6 Da    PI: 10.6293
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G051200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.81e-2145135186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                         +Wt +e+ aLi+a+r+++ +lrrg+lk+++W+ev++++     +    ++++qC++k+e+l+kry+ + +++++   s+  s++++f++++
  Potri.014G051200.1  45 CWTPDETVALIDAYRDKWYTLRRGNLKANHWQEVADAVarrcPAASPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFASSWVHFKRMD 135
                         8**********************************99966556667799*************************9779999*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2244136No hitNo description
PROSITE profilePS500906.22646106IPR017877Myb-like domain
SMARTSM005954.8E-1353142IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSTPPNTGSP SPPQDLTPLQ ITALQALPAP PTQPSTNPRR LPPPCWTPDE TVALIDAYRD  60
KWYTLRRGNL KANHWQEVAD AVARRCPAAS PPKTAVQCRH KMEKLRKRYR TEIQRARSMP  120
VSRFASSWVH FKRMDGMEKG PQAKADYNSE SEENYRTAGN VMNTRSIQKL YRNGMGNPGT  180
GSGNNGLSGG NSSSGNAGGF RIRIPTGVSI AQPGPKFYAK PEQKYGGGPS MGVNASPNPN  240
LKPNYGGMGS SSRVMRGGEE MGKKREREPM EELVAAIKVL GDGFVRMEQM KMEMAREMET  300
MRMEMEMKRT EMILESQQRI VEAFAKALSE KKKRPKRMPS PES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G051200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2771941e-151GU277194.1 Populus balsamifera isolate HAY07 haplotype A unknown protein gene, partial sequence.
GenBankGU2771961e-151GU277196.1 Populus balsamifera isolate INU03 haplotype A unknown protein gene, partial sequence.
GenBankGU2771981e-151GU277198.1 Populus balsamifera isolate KUU07 haplotype A unknown protein gene, partial sequence.
GenBankGU2772001e-151GU277200.1 Populus balsamifera isolate LOV02 haplotype A unknown protein gene, partial sequence.
GenBankGU2772021e-151GU277202.1 Populus balsamifera isolate MGR10 haplotype A unknown protein gene, partial sequence.
GenBankGU2772041e-151GU277204.1 Populus balsamifera isolate NWL07 haplotype A unknown protein gene, partial sequence.
GenBankGU2772061e-151GU277206.1 Populus balsamifera isolate STO11 haplotype A unknown protein gene, partial sequence.
GenBankGU2772161e-151GU277216.1 Populus balsamifera isolate RNA13 haplotype A unknown protein gene, partial sequence.
GenBankGU2772171e-151GU277217.1 Populus balsamifera isolate RNA13 haplotype B unknown protein gene, partial sequence.
GenBankGU2772181e-151GU277218.1 Populus balsamifera isolate POR11 haplotype A unknown protein gene, partial sequence.
GenBankGU2772191e-151GU277219.1 Populus balsamifera isolate POR11 haplotype B unknown protein gene, partial sequence.
GenBankGU2772201e-151GU277220.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence.
GenBankGU2772211e-151GU277221.1 Populus balsamifera isolate STL13 haplotype B unknown protein gene, partial sequence.
GenBankGU2772221e-151GU277222.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence.
GenBankGU2772231e-151GU277223.1 Populus balsamifera isolate WHR03 haplotype B unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441468.10.0trihelix transcription factor ASIL2
TrEMBLB9MV520.0B9MV52_POPTR; Uncharacterized protein
STRINGPOPTR_0014s05010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-77Trihelix family protein