PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G046800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 153aa    MW: 16908.7 Da    PI: 5.0352
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G046800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-1870121256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +ykG r+++ + +++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ k++g+
  Potri.014G046800.1  70 DYKGARRKP-WEKYAAEIRDPTKNG--ARIWLGTYETPEDAALAYDQAAFKMRGA 121
                         699999877.***********9998..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1170120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2870129IPR001471AP2/ERF domain
SMARTSM003801.5E-2970134IPR001471AP2/ERF domain
PROSITE profilePS5103221.53570128IPR001471AP2/ERF domain
PRINTSPR003671.1E-77182IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2171129IPR016177DNA-binding domain
CDDcd000182.03E-2571130No hitNo description
PRINTSPR003671.1E-794110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
RSSWSDIVLE IDSLGQTVVN DALEQESFDM QRQRVPSDPN IDSVTTNTVS YEAERDVEGA  60
STTAPKGRND YKGARRKPWE KYAAEIRDPT KNGARIWLGT YETPEDAALA YDQAAFKMRG  120
AKAKLDFPHL IGSIIAHQPV RVTDKLSSPE PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2866133268ATERF1
3gcc_A9e-2866133268ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G046800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375128.13e-87ethylene-responsive transcription factor 13
TrEMBLA0A3N7G1527e-86A0A3N7G152_POPTR; Uncharacterized protein
STRINGPOPTR_0014s04620.11e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-41ethylene-responsive element binding factor 13