PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G046600.1
Common NamePOPTR_0014s04600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 227aa    MW: 25331.4 Da    PI: 8.6215
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G046600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20117167255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +ykGVr+++ +g+++AeIrdp++ng  +r +lg++ t+e+Aa a+++a+ k++g
  Potri.014G046600.1 117 QYKGVRRRP-WGKYAAEIRDPKKNG--ARMWLGTYETPEDAALAYDRAAFKMRG 167
                         69*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-23117176IPR016177DNA-binding domain
CDDcd000181.34E-31117177No hitNo description
PROSITE profilePS5103223.802117175IPR001471AP2/ERF domain
SMARTSM003803.4E-39117181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-32117176IPR001471AP2/ERF domain
PRINTSPR003673.8E-13118129IPR001471AP2/ERF domain
PfamPF008473.5E-14118167IPR001471AP2/ERF domain
PRINTSPR003673.8E-13157177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MFGEKSLESG FDVLECNINT VASTSNVNAP TFYKSLSFSN IYSTESWGDL PLKQDDSEDM  60
IVYNALRDAV NFGWLPSILS LQSNMTTTTE EFPQTAVPLE VAPRESGPQP LKEKGLQYKG  120
VRRRPWGKYA AEIRDPKKNG ARMWLGTYET PEDAALAYDR AAFKMRGSKA KLNFPHLIGS  180
NNNWEPTRVT SKKRSSPEPS SSISISDYDS PRWTKQSKIS SGICFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-31114180268ATERF1
3gcc_A4e-31114180268ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G046600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375126.11e-169ethylene-responsive transcription factor 13
SwissprotQ8L9K18e-66ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLB9MV981e-167B9MV98_POPTR; Uncharacterized protein
STRINGPOPTR_0014s04600.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-64ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]