PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G041300.7
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 416aa    MW: 46026.3 Da    PI: 5.0217
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G041300.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.75.7e-16431476128
                 NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                          Fh +deel   +L k ++g++l+  +vi++v+ y + P++Lp      e+ wy    +++           t  g+Wk +g+  +++s +
  Potri.014G041300.7  43 DFHCRDEELF-MFLYKLTSGSPLPG-NVITDVNPYIYAPSNLP------EDIWYLLRVKEN---------DDTGLGFWKVKGEACKLFS-N 115
                         69*******9.99***********9.99**************9......345666555443.........45899**************.9 PP

                 NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ +g ++tL f++g+ p+ +ktdW+m+ey +
  Potri.014G041300.7 116 SAITGWRTTLEFFEGQVPHERKTDWLMQEYWI 147
                         99****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.91838170IPR003441NAC domain
PfamPF023652.4E-842145IPR003441NAC domain
SuperFamilySSF1019414.58E-2343169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLLQAIPATA KGAERYFDPR AVCFPLDSAT MCPPASSPVA DIDFHCRDEE LFMFLYKLTS  60
GSPLPGNVIT DVNPYIYAPS NLPEDIWYLL RVKENDDTGL GFWKVKGEAC KLFSNSAITG  120
WRTTLEFFEG QVPHERKTDW LMQEYWITQK EHIEKRKAKE ARSLCRVFLG GEQALDHENQ  180
LIASPHSDTH IDLTQSIGPG TLADTSHGSS SNPEVNKDDE TENMVATGRP PNLPVANLPE  240
IDCFSRGDYL ELLDLDNPAS RSSSSDNSSC MTMSSDEYFD SIALLRDLES ESNQALAQKD  300
KDCKLSVAAS LRPDEVVVLP ASHGSYISNE GGKPHAVETD SSINGNGHRD LDIQRAVRNQ  360
GANHWGEGPS SNFHAVGASS GGHVASPDEE EKAARRRRKK SKKKYLCFVP FYFFF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394402RRRRKKSKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.96930.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G041300.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1466750.0EF146675.1 Populus trichocarpa clone WS01211_M01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375068.20.0NAC domain-containing protein 37 isoform X1
RefseqXP_024441029.10.0NAC domain-containing protein 37 isoform X1
TrEMBLA0A2K1XQ900.0A0A2K1XQ90_POPTR; Uncharacterized protein
STRINGPOPTR_0014s04080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.15e-16NAC domain containing protein 28
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]