PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G041300.5
Common NamePOPTR_0014s04080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 386aa    MW: 42790.5 Da    PI: 5.0011
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G041300.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM514.8e-16131176128
                 NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                          Fh +deel   +L k ++g++l+  +vi++v+ y + P++Lp      e+ wy    +++           t  g+Wk +g+  +++s +
  Potri.014G041300.5  13 DFHCRDEELF-MFLYKLTSGSPLPG-NVITDVNPYIYAPSNLP------EDIWYLLRVKEN---------DDTGLGFWKVKGEACKLFS-N 85 
                         69*******9.99***********9.99**************9......345666555443.........45899**************.9 PP

                 NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ +g ++tL f++g+ p+ +ktdW+m+ey +
  Potri.014G041300.5  86 SAITGWRTTLEFFEGQVPHERKTDWLMQEYWI 117
                         99****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.9188140IPR003441NAC domain
PfamPF023652.1E-812115IPR003441NAC domain
SuperFamilySSF1019414.71E-2313139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MCPPASSPVA DIDFHCRDEE LFMFLYKLTS GSPLPGNVIT DVNPYIYAPS NLPEDIWYLL  60
RVKENDDTGL GFWKVKGEAC KLFSNSAITG WRTTLEFFEG QVPHERKTDW LMQEYWITQK  120
EHIEKRKAKE ARSLCRVFLG GEQALDHENQ LIASPHSDTH IDLTQSIGPG TLADTSHGSS  180
SNPEVNKDDE TENMVATGRP PNLPVANLPE IDCFSRGDYL ELLDLDNPAS RSSSSDNSSC  240
MTMSSDEYFD SIALLRDLES ESNQALAQKD KDCKLSVAAS LRPDEVVVLP ASHGSYISNE  300
GGKPHAVETD SSINGNGHRD LDIQRAVRNQ GANHWGEGPS SNFHAVGASS GGHVASPDEE  360
EKAARRRRKK SKKKYLCFVP FYFFF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364372RRRRKKSKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.96930.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G041300.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1466750.0EF146675.1 Populus trichocarpa clone WS01211_M01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375068.20.0NAC domain-containing protein 37 isoform X1
RefseqXP_024441029.10.0NAC domain-containing protein 37 isoform X1
TrEMBLA0A2K1XQ810.0A0A2K1XQ81_POPTR; Uncharacterized protein
TrEMBLA0A2K1XQ900.0A0A2K1XQ90_POPTR; Uncharacterized protein
STRINGPOPTR_0014s04080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-16NAC domain containing protein 28