PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.014G041300.4 | ||||||||
Common Name | POPTR_0014s04080g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 386aa MW: 42790.5 Da PI: 5.0011 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 51 | 4.8e-16 | 13 | 117 | 6 | 128 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 Fh +deel +L k ++g++l+ +vi++v+ y + P++Lp e+ wy +++ t g+Wk +g+ +++s + Potri.014G041300.4 13 DFHCRDEELF-MFLYKLTSGSPLPG-NVITDVNPYIYAPSNLP------EDIWYLLRVKEN---------DDTGLGFWKVKGEACKLFS-N 85 69*******9.99***********9.99**************9......345666555443.........45899**************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g ++tL f++g+ p+ +ktdW+m+ey + Potri.014G041300.4 86 SAITGWRTTLEFFEGQVPHERKTDWLMQEYWI 117 99****************************75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.918 | 8 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-8 | 12 | 115 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.71E-23 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 386 aa Download sequence Send to blast |
MCPPASSPVA DIDFHCRDEE LFMFLYKLTS GSPLPGNVIT DVNPYIYAPS NLPEDIWYLL 60 RVKENDDTGL GFWKVKGEAC KLFSNSAITG WRTTLEFFEG QVPHERKTDW LMQEYWITQK 120 EHIEKRKAKE ARSLCRVFLG GEQALDHENQ LIASPHSDTH IDLTQSIGPG TLADTSHGSS 180 SNPEVNKDDE TENMVATGRP PNLPVANLPE IDCFSRGDYL ELLDLDNPAS RSSSSDNSSC 240 MTMSSDEYFD SIALLRDLES ESNQALAQKD KDCKLSVAAS LRPDEVVVLP ASHGSYISNE 300 GGKPHAVETD SSINGNGHRD LDIQRAVRNQ GANHWGEGPS SNFHAVGASS GGHVASPDEE 360 EKAARRRRKK SKKKYLCFVP FYFFF* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 364 | 372 | RRRRKKSKK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.9693 | 0.0 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.014G041300.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF146675 | 0.0 | EF146675.1 Populus trichocarpa clone WS01211_M01 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375068.2 | 0.0 | NAC domain-containing protein 37 isoform X1 | ||||
Refseq | XP_024441029.1 | 0.0 | NAC domain-containing protein 37 isoform X1 | ||||
TrEMBL | A0A2K1XQ81 | 0.0 | A0A2K1XQ81_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A2K1XQ90 | 0.0 | A0A2K1XQ90_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s04080.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65910.1 | 3e-16 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.014G041300.4 |
Entrez Gene | 18105005 |