PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.014G041300.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 416aa MW: 46026.3 Da PI: 5.0217 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.7 | 5.7e-16 | 43 | 147 | 6 | 128 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 Fh +deel +L k ++g++l+ +vi++v+ y + P++Lp e+ wy +++ t g+Wk +g+ +++s + Potri.014G041300.3 43 DFHCRDEELF-MFLYKLTSGSPLPG-NVITDVNPYIYAPSNLP------EDIWYLLRVKEN---------DDTGLGFWKVKGEACKLFS-N 115 69*******9.99***********9.99**************9......345666555443.........45899**************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g ++tL f++g+ p+ +ktdW+m+ey + Potri.014G041300.3 116 SAITGWRTTLEFFEGQVPHERKTDWLMQEYWI 147 99****************************75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.918 | 38 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-8 | 42 | 145 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.58E-23 | 43 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 416 aa Download sequence Send to blast |
MLLQAIPATA KGAERYFDPR AVCFPLDSAT MCPPASSPVA DIDFHCRDEE LFMFLYKLTS 60 GSPLPGNVIT DVNPYIYAPS NLPEDIWYLL RVKENDDTGL GFWKVKGEAC KLFSNSAITG 120 WRTTLEFFEG QVPHERKTDW LMQEYWITQK EHIEKRKAKE ARSLCRVFLG GEQALDHENQ 180 LIASPHSDTH IDLTQSIGPG TLADTSHGSS SNPEVNKDDE TENMVATGRP PNLPVANLPE 240 IDCFSRGDYL ELLDLDNPAS RSSSSDNSSC MTMSSDEYFD SIALLRDLES ESNQALAQKD 300 KDCKLSVAAS LRPDEVVVLP ASHGSYISNE GGKPHAVETD SSINGNGHRD LDIQRAVRNQ 360 GANHWGEGPS SNFHAVGASS GGHVASPDEE EKAARRRRKK SKKKYLCFVP FYFFF* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 394 | 402 | RRRRKKSKK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.9693 | 0.0 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.014G041300.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF146675 | 0.0 | EF146675.1 Populus trichocarpa clone WS01211_M01 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375068.2 | 0.0 | NAC domain-containing protein 37 isoform X1 | ||||
Refseq | XP_024441029.1 | 0.0 | NAC domain-containing protein 37 isoform X1 | ||||
TrEMBL | A0A2K1XQ90 | 0.0 | A0A2K1XQ90_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s04080.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10588 | 22 | 35 | Representative plant | OGRP12164 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65910.1 | 5e-16 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.014G041300.3 |
Publications ? help Back to Top | |||
---|---|---|---|
|