PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G041300.2
Common NamePOPTR_0014s04080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 410aa    MW: 45526.7 Da    PI: 4.9452
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G041300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.85.3e-16371416128
                 NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                          Fh +deel   +L k ++g++l+  +vi++v+ y + P++Lp      e+ wy    +++           t  g+Wk +g+  +++s +
  Potri.014G041300.2  37 DFHCRDEELF-MFLYKLTSGSPLPG-NVITDVNPYIYAPSNLP------EDIWYLLRVKEN---------DDTGLGFWKVKGEACKLFS-N 109
                         69*******9.99***********9.99**************9......345666555443.........45899**************.9 PP

                 NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ +g ++tL f++g+ p+ +ktdW+m+ey +
  Potri.014G041300.2 110 SAITGWRTTLEFFEGQVPHERKTDWLMQEYWI 141
                         99****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.91832164IPR003441NAC domain
PfamPF023652.4E-836139IPR003441NAC domain
SuperFamilySSF1019414.45E-2337163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MLLQAIPERY FDPRAVCFPL DSATMCPPAS SPVADIDFHC RDEELFMFLY KLTSGSPLPG  60
NVITDVNPYI YAPSNLPEDI WYLLRVKEND DTGLGFWKVK GEACKLFSNS AITGWRTTLE  120
FFEGQVPHER KTDWLMQEYW ITQKEHIEKR KAKEARSLCR VFLGGEQALD HENQLIASPH  180
SDTHIDLTQS IGPGTLADTS HGSSSNPEVN KDDETENMVA TGRPPNLPVA NLPEIDCFSR  240
GDYLELLDLD NPASRSSSSD NSSCMTMSSD EYFDSIALLR DLESESNQAL AQKDKDCKLS  300
VAASLRPDEV VVLPASHGSY ISNEGGKPHA VETDSSINGN GHRDLDIQRA VRNQGANHWG  360
EGPSSNFHAV GASSGGHVAS PDEEEKAARR RRKKSKKKYL CFVPFYFFF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388396RRRRKKSKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.96930.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G041300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1466750.0EF146675.1 Populus trichocarpa clone WS01211_M01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441031.10.0NAC domain-containing protein 79 isoform X4
TrEMBLA0A2K1XQ820.0A0A2K1XQ82_POPTR; Uncharacterized protein
STRINGPOPTR_0014s04080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.15e-16NAC domain containing protein 28