PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G041300.1
Common NamePOPTR_0014s04080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 412aa    MW: 45654.8 Da    PI: 4.9452
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G041300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.85.6e-16391436128
                 NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                          Fh +deel   +L k ++g++l+  +vi++v+ y + P++Lp      e+ wy    +++           t  g+Wk +g+  +++s +
  Potri.014G041300.1  39 DFHCRDEELF-MFLYKLTSGSPLPG-NVITDVNPYIYAPSNLP------EDIWYLLRVKEN---------DDTGLGFWKVKGEACKLFS-N 111
                         69*******9.99***********9.99**************9......345666555443.........45899**************.9 PP

                 NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ +g ++tL f++g+ p+ +ktdW+m+ey +
  Potri.014G041300.1 112 SAITGWRTTLEFFEGQVPHERKTDWLMQEYWI 143
                         99****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.91834166IPR003441NAC domain
PfamPF023652.4E-838141IPR003441NAC domain
SuperFamilySSF1019414.45E-2339165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MLLQAIPGAE RYFDPRAVCF PLDSATMCPP ASSPVADIDF HCRDEELFMF LYKLTSGSPL  60
PGNVITDVNP YIYAPSNLPE DIWYLLRVKE NDDTGLGFWK VKGEACKLFS NSAITGWRTT  120
LEFFEGQVPH ERKTDWLMQE YWITQKEHIE KRKAKEARSL CRVFLGGEQA LDHENQLIAS  180
PHSDTHIDLT QSIGPGTLAD TSHGSSSNPE VNKDDETENM VATGRPPNLP VANLPEIDCF  240
SRGDYLELLD LDNPASRSSS SDNSSCMTMS SDEYFDSIAL LRDLESESNQ ALAQKDKDCK  300
LSVAASLRPD EVVVLPASHG SYISNEGGKP HAVETDSSIN GNGHRDLDIQ RAVRNQGANH  360
WGEGPSSNFH AVGASSGGHV ASPDEEEKAA RRRRKKSKKK YLCFVPFYFF F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390398RRRRKKSKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.96930.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G041300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1466750.0EF146675.1 Populus trichocarpa clone WS01211_M01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375066.20.0NAC domain-containing protein 79 isoform X3
TrEMBLA0A2K1XQ750.0A0A2K1XQ75_POPTR; Uncharacterized protein
STRINGPOPTR_0014s04080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.15e-16NAC domain containing protein 28