PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G036900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 362aa    MW: 41707.2 Da    PI: 8.0702
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G036900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.6e-1830114598
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         l   +++  ++l +p kf  +h ++k     +tl+ +sg +W+v+l  +  +++++++ GW++Fvk++ L+e+D ++Fk++g+s f   v 
  Potri.014G036900.1  30 L---SAGFDHQLPIPEKFS-NHLKNK-LLENVTLKGPSGSTWQVEL--TTDDNTMFFKHGWEDFVKDHFLEEKDLLIFKYNGESYF--DVL 111
                         4...4556678*******8.553333.6669***************..999999**************************998888..888 PP

                         EE- CS
                  B3  96 vfr 98 
                         +f+
  Potri.014G036900.1 112 IFD 114
                         876 PP
2B349.86.2e-16262358197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..se 89 
                         f+ v++p +v ++  +v+p    ++h      +k++++   + ++W+ ++ y k++++  l++GWk+F+ +n+L+e D+++F+ +g+  ++
  Potri.014G036900.1 262 FVVVMKPTHVYRKFYMVIPSAWSTRHFRT--LEKKVVILRVKENTWNTNFLYYKSKNSGGLSSGWKSFALDNNLQEFDVCLFEPSGTmnNS 350
                         7899**********************744..6679*****************99999999***********************88773355 PP

                         E..EEEEE CS
                  B3  90 felvvkvf 97 
                         f l v +f
  Potri.014G036900.1 351 FVLDVNIF 358
                         55555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2121114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.00223116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-2224114IPR015300DNA-binding pseudobarrel domain
CDDcd100175.74E-2025114No hitNo description
SMARTSM010191.7E-1426116IPR003340B3 DNA binding domain
PfamPF023623.0E-1531114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-20256359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-18261350IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-21262359No hitNo description
PfamPF023627.0E-15262358IPR003340B3 DNA binding domain
PROSITE profilePS5086312.125262361IPR003340B3 DNA binding domain
SMARTSM010191.6E-12262361IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGEETCEDCR GWEEELYWTH FQCTHFFQIL SAGFDHQLPI PEKFSNHLKN KLLENVTLKG  60
PSGSTWQVEL TTDDNTMFFK HGWEDFVKDH FLEEKDLLIF KYNGESYFDV LIFDGQSFCE  120
KAASYFVRKC GHREGDSFVQ TKRKAVEDSV EVTNACPHNG LGGTPEKSAD GYIYKTPVRN  180
SVVSKAINKK TRREVKFSKP IQTRKRVRYE GPSSTAEEIE TKPDVQHIPI GTTYVSSRRM  240
VTEQDKLNAL RLAQTAQTNE GFVVVMKPTH VYRKFYMVIP SAWSTRHFRT LEKKVVILRV  300
KENTWNTNFL YYKSKNSGGL SSGWKSFALD NNLQEFDVCL FEPSGTMNNS FVLDVNIFRV  360
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1423636022142B3 domain-containing transcription factor VRN1
4i1k_B5e-1423636022142B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G036900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441262.10.0B3 domain-containing protein REM16 isoform X2
TrEMBLA0A2K1XQ190.0A0A2K1XQ19_POPTR; Uncharacterized protein
STRINGcassava4.1_010400m1e-167(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-84B3 family protein