PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G025900.1
Common NamePOPTR_0014s02600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 292aa    MW: 32121.5 Da    PI: 8.458
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G025900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-1384127855
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          Er RR+++++ f+ L  llP++      K +K++i+ +Av+YIk Lq
  Potri.014G025900.1  84 TERERRKKMRNMFSSLHALLPQL----PAKADKSSIVDEAVKYIKTLQ 127
                         6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-1675137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.16E-1175123No hitNo description
PROSITE profilePS5088814.25376126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1580138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1084127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-1084132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.66E-5209283No hitNo description
CDDcd048731.89E-4214248No hitNo description
Gene3DG3DSA:3.30.70.2604.0E-4216286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSTIKTCRET LLAAFTDNSD NYKKLVSKSY NNYSATSSLM DTEIPAVAVV PGQKRSRKGG  60
DARNKKVVNG GGSGESEHEI HIWTERERRK KMRNMFSSLH ALLPQLPAKA DKSSIVDEAV  120
KYIKTLQQTL QTLQKQKVEK FQGAIIDFEP SVITSLTDTV GSREASFAAL GPSKNSPLTS  180
KMSQNSFSVS LSPACFQTWF SPNVVMNMCG DDAQFSLCST RKPGLLATIL YILEKHNLDV  240
VSAHISSDQY RSIYMIHAHA DGASDQYPEA MSVEDTFKLA AGEMNLWVMS C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G025900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4465916e-35AM446591.2 Vitis vinifera contig VV78X122741.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374909.10.0transcription factor bHLH95 isoform X2
TrEMBLB9MVT40.0B9MVT4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-42bHLH family protein