PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G025100.1
Common NamePOPTR_0014s02520g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 420aa    MW: 47803.1 Da    PI: 7.1716
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G025100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05166189123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C+ Cg+ ++++ +Lk+H +  H
  Potri.014G025100.1 166 YVCGVCGRKCKTNLDLKKHFKQlH 189
                         9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0067808296IPR019775WD40 repeat, conserved site
Gene3DG3DSA:3.40.50.10103.3E-686156IPR029060PIN domain-like
PROSITE profilePS5015710.679166194IPR007087Zinc finger, C2H2
PROSITE patternPS000280168189IPR007087Zinc finger, C2H2
CDDcd061678.25E-13180320No hitNo description
Gene3DG3DSA:3.40.50.10103.3E-6251316IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MTPLCKAIDT TTASLLKPSI LLHKTPLNFC HSLNYTPNLS NNNLTLTSKP PQNHLRPITA  60
TANASHPAAT SEIDMVKNRQ GIYTSKQNKV VVLWDLDNKP PRGPPYPAAM ALKTVAQRFG  120
EVIDMCAYAN RHAFIHLPHW VLEERRERKH LDILERKEIV SPSQPYVCGV CGRKCKTNLD  180
LKKHFKQLHE RERQKKVNRM RSLKGKKRQR YKERFVSGNH KYNEEARRLL TPKIGYGLAA  240
ELKRAGVYVK TVEDKPQAAD WALKRQIEHS MSRGVDWLVL VSDDSDFSEI LRKAREANLG  300
TVVVGDRDRA LGRHADLWVP WIGVENGELT EKDLVPKGRW RSEDLENDEG LFSVTDFDED  360
GDYGGNDLEG FVDGLVMARS GFNGTRISAF SEGEEEDEQD YLLYDSEYEE IELEDGGFW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G025100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374901.10.0uncharacterized protein LOC18104859
TrEMBLU5FNF90.0U5FNF9_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-155C2H2-like zinc finger protein