PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G024200.5
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 368aa    MW: 40469.1 Da    PI: 10.1355
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G024200.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.53.6e-10289308322
                         -SS-EEEEEEE--TT-SS-E CS
                WRKY   3 DgynWrKYGqKevkgsefpr 22 
                         D y+WrKYGqK++kgs++pr
  Potri.014G024200.5 289 DDYSWRKYGQKPIKGSPHPR 308
                         99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.8E-16239285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-10275308IPR003657WRKY domain
PROSITE profilePS5081112.117282308IPR003657WRKY domain
SuperFamilySSF1182907.06E-8285309IPR003657WRKY domain
SMARTSM007748.6E-4287318IPR003657WRKY domain
PfamPF031061.7E-6289308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAVELMMGYS GDSFATKMQE NDVREAATAG IQSVEEVIKL LKQNQLEQQQ KQQYYQELSA  60
ASSSSNLGTD NIMAVTDMAV NNFKKVISLL GRTTRTGHAR FRRAPVACPP QQQIQEPEPG  120
PQQQKQQVQE PVPYVRAINS QPTEQGSAFR VYQPTPIHRL PPLPHNQQQK TLLVTKNGLS  180
DRNEMATTIN FANSPTISAP SFLSSLTGET DSFQCSKSSG FQFTQPSAGK PPLSSSSLKR  240
KCNSMDDAAL KCGSSSSRCH CSKKSRKSRI KRVVRVPAIS SKMADIPPDD YSWRKYGQKP  300
IKGSPHPRYP KVAFFVSLVL NTFWVLSVLQ CSFHVSIYTW IAVGKSKNST LIPFVSTCLG  360
DTTSAVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.9150.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G024200.5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774340.0GQ377434.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441317.10.0probable WRKY transcription factor 7 isoform X1
SwissprotQ9STX02e-82WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2I4KK890.0A0A2I4KK89_POPTR; WRKY family protein
STRINGPOPTR_0014s02420.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-54WRKY DNA-binding protein 7