PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G024200.3
Common NamePOPTR_0014s02420g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 361aa    MW: 39781 Da    PI: 9.6903
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G024200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.5e-31288345359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYegeHnh+
  Potri.014G024200.3 288 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDSMMLIVTYEGEHNHS 345
                         99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.4E-17239284IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.5E-33274347IPR003657WRKY domain
PROSITE profilePS5081131.582281347IPR003657WRKY domain
SuperFamilySSF1182908.37E-27284347IPR003657WRKY domain
SMARTSM007743.8E-37286346IPR003657WRKY domain
PfamPF031061.5E-26288344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAVELMMGYS GDSFATKMQE NDVREAATAG IQSVEEVIKL LKQNQLEQQQ KQQYYQELSA  60
ASSSSNLGTD NIMAVTDMAV NNFKKVISLL GRTTRTGHAR FRRAPVACPP QQQIQEPEPG  120
PQQQKQQVQE PVPYVRAINS QPTEQGSAFR VYQPTPIHRL PPLPHNQQQK TLLVTKNGLS  180
DRNEMATTIN FANSPTISAP SFLSSLTGET DSFQCSKSSG FQFTQPSAGK PPLSSSSLKR  240
KCNSMDDAAL KCGSSSSRCH CSKKRKSRIK RVVRVPAISS KMADIPPDDY SWRKYGQKPI  300
KGSPHPRGYY KCSSVRGCPA RKHVERALDD SMMLIVTYEG EHNHSHPIDE APGALVLESS  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22274347274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.9150.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G024200.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774340.0GQ377434.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441318.10.0probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-117WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2K1XPD00.0A0A2K1XPD0_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02420.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-86WRKY DNA-binding protein 7