PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.014G024200.1 | ||||||||
Common Name | POPTR_0014s02420g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 389aa MW: 42938.6 Da PI: 9.7644 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 8.4e-31 | 316 | 373 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d ++++tYegeHnh+ Potri.014G024200.1 316 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDSMMLIVTYEGEHNHS 373 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.1E-16 | 266 | 312 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 6.3E-33 | 302 | 375 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.582 | 309 | 375 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-27 | 312 | 375 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-37 | 314 | 374 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 316 | 372 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 389 aa Download sequence Send to blast |
MPLAFERGKV NQSIERKRDS VLDGVKDMAV ELMMGYSGDS FATKMQENDV REAATAGIQS 60 VEEVIKLLKQ NQLEQQQKQQ YYQELSAASS SSNLGTDNIM AVTDMAVNNF KKVISLLGRT 120 TRTGHARFRR APVACPPQQQ IQEPEPGPQQ QKQQVQEPVP YVRAINSQPT EQGSAFRVYQ 180 PTPIHRLPPL PHNQQQKTLL VTKNGLSDRN EMATTINFAN SPTISAPSFL SSLTGETDSF 240 QCSKSSGFQF TQPSAGKPPL SSSSLKRKCN SMDDAALKCG SSSSRCHCSK KSRKSRIKRV 300 VRVPAISSKM ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERALDDSM 360 MLIVTYEGEH NHSHPIDEAP GALVLESS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-22 | 302 | 375 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.915 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.014G024200.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ377434 | 0.0 | GQ377434.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441317.1 | 0.0 | probable WRKY transcription factor 7 isoform X1 | ||||
Swissprot | Q9STX0 | 1e-115 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A2I4KK89 | 0.0 | A0A2I4KK89_POPTR; WRKY family protein | ||||
STRING | POPTR_0014s02420.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 | Representative plant | OGRP8844 | 6 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24240.1 | 4e-86 | WRKY DNA-binding protein 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.014G024200.1 |
Entrez Gene | 18104849 |