PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G022500.1
Common NamePOPTR_0014s02260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 312aa    MW: 33718 Da    PI: 9.0432
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G022500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.28.9e-191257147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
  Potri.014G022500.1 12 KGPWSPEEDEALQRLVQTYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                        79******************************.***********985 PP
2Myb_DNA-binding51.81.9e-1666108347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++++eEd+ +++a+++ G++ W+tIar ++ gRt++ +k++w++ 
  Potri.014G022500.1  66 PFSAEEDDTIIRAHARIGNK-WATIARLLN-GRTDNAIKNHWNST 108
                         89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.929762IPR017930Myb domain
SuperFamilySSF466894.12E-329105IPR009057Homeodomain-like
SMARTSM007172.6E-171160IPR001005SANT/Myb domain
PfamPF002491.7E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-261365IPR009057Homeodomain-like
CDDcd001671.51E-161456No hitNo description
SMARTSM007171.7E-1363111IPR001005SANT/Myb domain
PROSITE profilePS5129419.5564113IPR017930Myb domain
PfamPF002493.9E-1466108IPR001005SANT/Myb domain
CDDcd001671.34E-1066109No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2266112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MASSRKDVDR IKGPWSPEED EALQRLVQTY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
EVEHRPFSAE EDDTIIRAHA RIGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMFDDL  120
NDDAQQQPLK RSASLGAGSG LHLNPSSPSG SDLSDSSIPG VNSSPVFRPP VKTASLVPPS  180
LSIDVSSPTV DPPTSLSLSL PGSITCQAPG SGSSSGSHVV NPTPMVQTPA APPQAAVAVQ  240
QQEQVSFLQQ KNPGSRLENQ FFSAEFLAVM QEMIRKEVRN YMSGIEQNGL CLGTEAIRNA  300
VVKRIGISRI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-41111133105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-41111133105C-Myb DNA-Binding Domain
1msf_C2e-41111133105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.177480.0bud| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G022500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0297700.0CT029770.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374871.10.0transcription factor MYB44
SwissprotO231601e-92MYB73_ARATH; Transcription factor MYB73
TrEMBLB9MVW30.0B9MVW3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-73myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]