PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G012800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRF | ||||||||
Protein Properties | Length: 610aa MW: 65989 Da PI: 8.5626 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.1 | 1.8e-24 | 219 | 263 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Potri.014G012800.1 219 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 263 79****************************************985 PP | |||||||
2 | QLQ | 61.4 | 2.5e-21 | 150 | 185 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+++L++Q+l+yKy+aan+P+P++Ll++i+k Potri.014G012800.1 150 PFTQSQWMELEHQALIYKYIAANVPIPSNLLLPIRK 185 8*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.6E-12 | 149 | 185 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.8E-16 | 150 | 184 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.576 | 150 | 185 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.663 | 219 | 263 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.3E-21 | 220 | 262 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MDFGVQVGLD GLVGSDTSNS GFASLAGSDP EAKQKLYGSG FLKQERPGNI DGDWRSSKLS 60 KTESMLLEQS NTSLLKSSSN FLFADGQQQQ QQMLSFSYPR SAPSAERSSQ NGTLPYFHLT 120 SSAHNRNTGY SSGIYNAASM HGVLTETRWP FTQSQWMELE HQALIYKYIA ANVPIPSNLL 180 LPIRKALDSA GFPSFSAGFF RPNTLPWGAF HMGFSSNTDP EPGRCRRTDG KKWRCSRDAV 240 ADQKYCERHM NRGRHRSRKP VEGQSGHSAA AATTVKPANG TSSSTSSSVV GLRSTVSDSL 300 TIAHNQQQAA SPSNLSASNT LSRMFLTKEN VGERTQDATA LSMLRSNMDL KSKETPFFIS 360 KQQNSYGESL RNEFGLVTSD SLLNHSQKSS SLMSCRNFGS SQDLTDQESV SQHSLRQFMD 420 DWPKSQSDRS AVSWPELDQQ SERTQLSISI PMAPADFMSS TSSPNNEKVT LSPLRLSREF 480 DPIQMGLGVG GGGGGIANEP NQRQANWIPI SWGTSMGGPL GEVLHNTNNN AAAECKTTSS 540 LNLMTYRWDN SPRIGSSPTG VLQKSAFASL SNSSAGSSPR AENKTNEGGS LCNDLLGSTI 600 VHSSSLPAM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G012800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM473368 | 3e-66 | AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320016.3 | 0.0 | growth-regulating factor 1 | ||||
TrEMBL | A0A2K1XNU7 | 0.0 | A0A2K1XNU7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s01320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2085 | 34 | 81 | Representative plant | OGRP3357 | 12 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 4e-97 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G012800.1 |