PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.014G009500.1 | ||||||||
Common Name | POPTR_0014s00690g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 171aa MW: 19588.8 Da PI: 10.1856 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 31.8 | 2.9e-10 | 28 | 60 | 28 | 60 |
-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 28 tsagCpvkkkversaedpkvveitYegeHnhek 60 + +gCp++k+vers edp+++++ Y+ge nh+k Potri.014G009500.1 28 SRRGCPARKHVERSLEDPSMLVVAYKGERNHSK 60 3459***************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 4.6E-5 | 22 | 60 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.749 | 25 | 61 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-9 | 27 | 60 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-6 | 28 | 58 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-6 | 30 | 59 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MGELVQVFKP WHPIDINSLV SKETKSSSRR GCPARKHVER SLEDPSMLVV AYKGERNHSK 60 IAFQSPSMYL TTKSNHRTIV FSKLELFATA KIEFSSLVFQ YLSTQKKESI NQDFCHMPYQ 120 IYINKDHNKS TCCTTGWKIQ DLWILNLVAG LKILGRAFRP KTLKFADPHI * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.014G009500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC209227 | 1e-151 | AC209227.1 Populus trichocarpa clone POP074-P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | B9NDT5 | 1e-125 | B9NDT5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s00690.1 | 1e-126 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30590.1 | 4e-13 | WRKY DNA-binding protein 21 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.014G009500.1 |
Entrez Gene | 18104754 |