PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G008100.1 | ||||||||
Common Name | POPTR_0014s01260g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 550aa MW: 61150.1 Da PI: 7.4822 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.5 | 5.2e-16 | 193 | 252 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Potri.014G008100.1 193 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRTVYLGGYDMEEKAARAYDLAALKYWG 252 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 45.6 | 1.8e-14 | 297 | 346 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Potri.014G008100.1 297 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 346 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-16 | 193 | 262 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.18E-21 | 193 | 260 | No hit | No description |
Pfam | PF00847 | 3.6E-13 | 193 | 252 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-28 | 194 | 266 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.887 | 194 | 260 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-16 | 194 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-6 | 195 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.53E-24 | 295 | 353 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-17 | 295 | 354 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.7E-33 | 296 | 360 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.966 | 296 | 354 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-18 | 296 | 353 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-10 | 297 | 346 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-6 | 336 | 356 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MALSLDSSPS MYYHQDPDHE PNNQNCLNHL QQNPRQQQQQ QHQHIQVQHY PCYSNFRNNE 60 MLVGEDAKQM AQASDCSLKL PNMGDDGITG MKNWVSRNYQ GNHAMEQKML RCMVENGGES 120 GPNISAMAYG DLQCLSLSMS PGSQSSCVTG SLQVSPSVND CAAMETKKRG PGKVDQKQIV 180 HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRTVYL GGYDMEEKAA 240 RAYDLAALKY WGPSTHINFP LENYQNEIEE MKNMTRQEYV AHLRRKSSGF SRGASMYRGV 300 TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDVA AIKFRGVNAV TNFVITRYDV 360 ERIMASSTLL AGELARRNKD IGPCDDASTN HSIPSTHNSN GESLPSQNCE NESDWKMVLY 420 QSSQQQLDHK ASNVMDNYKT QAFLLSPENV IGIDCMSSVH QHEFEDSSKM GAHMSNASSL 480 VTSLSSSREG SPDRASLPML FGMPPSAASK LFTSPNGDVS SWIPSAAAAQ LRPAVSLPHA 540 PVFAAWTDA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.5553 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G008100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210555 | 0.0 | AC210555.1 Populus trichocarpa clone POP104-J03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440363.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q84Z02 | 1e-150 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A2K1XNJ7 | 0.0 | A0A2K1XNJ7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s01260.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-136 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G008100.1 |
Entrez Gene | 7464779 |
Publications ? help Back to Top | |||
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