PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G004900.3
Common NamePOPTR_0014s01010g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 294aa    MW: 31974.1 Da    PI: 10.5514
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G004900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT+eE+  l+ +v ++G+g W+tI            R+  ++k++w++
  Potri.014G004900.3  5 KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDfsavlRLRSNVDLKDKWRN 55
                        79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.268161IPR017930Myb domain
SuperFamilySSF466895.23E-15267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-12456IPR009057Homeodomain-like
SMARTSM007175.8E-6459IPR001005SANT/Myb domain
PfamPF002492.1E-7555IPR001005SANT/Myb domain
CDDcd116603.93E-17657No hitNo description
SMARTSM005261.1E-12116182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.719119187IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.58E-15122196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-14123189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.2E-10124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRT ILMDPDFSAV LRLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRSPLTPK REENGKALSV VVQSNEEVVD AKPLAMASGT PRNGGPKDLL  120
ARLDNLILEA ITTLKEPSGS DRASIALYIQ EKYWAPMNLR KLLGGKLKHL TANGKLIKVK  180
HKYMIASSST VSEGRRNHPL PEGKQKEMLK LEKSKNKILT KAQVDQDLLK IRGMTALEAA  240
AAAAAAVAEA ETAIAEAEAA AREAEKAEAE AEAAQVFAKA AIKAFKHRAC HPW*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G004900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826820.0AC182682.2 Populus trichocarpa clone Pop1-33J5, complete sequence.
GenBankAC2166810.0AC216681.1 Populus trichocarpa clone POP023-F05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320656.20.0telomere repeat-binding factor 2 isoform X3
RefseqXP_011007864.10.0PREDICTED: telomere repeat-binding factor 2-like isoform X3
RefseqXP_011007865.10.0PREDICTED: telomere repeat-binding factor 2-like isoform X4
RefseqXP_011007866.10.0PREDICTED: telomere repeat-binding factor 2-like isoform X5
RefseqXP_024441508.10.0telomere repeat-binding factor 2 isoform X1
RefseqXP_024441509.10.0telomere repeat-binding factor 2 isoform X1
RefseqXP_024441510.10.0telomere repeat-binding factor 2 isoform X2
RefseqXP_024441511.10.0telomere repeat-binding factor 2 isoform X4
SwissprotQ9FJW52e-80TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A2K1XNG50.0A0A2K1XNG5_POPTR; Uncharacterized protein
STRINGPOPTR_0014s01010.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.26e-73MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]