PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G000700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 424aa MW: 46972.3 Da PI: 5.0768 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.2 | 1.6e-32 | 202 | 256 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWt+eLHerF++av++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl Potri.014G000700.1 202 KPRMRWTTELHERFLDAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 256 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.781 | 199 | 259 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.66E-18 | 200 | 256 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-31 | 201 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-25 | 202 | 257 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.7E-9 | 204 | 255 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.9E-23 | 292 | 339 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MQVSTVQHQK YHPKSGPDSP VSLAYHVQLS KSTFQRSSVF CTSLYLSSSS ISETNRQLGN 60 FPFLPHPPTY SQSVSATDST KSPQLVSEDL SSPFDEERSD GFMIDFLNLS GDASEGGFHG 120 MNCTSDNLEL TEQLELQFLS DELDIAITDH GENPRLDEIY GTPETSSKPV TGFACYQNFP 180 SIAPPVDALS SQPSLGSSTA HKPRMRWTTE LHERFLDAVN KLDGAEKATP KGVLKLMNVE 240 GLTIYHVKSH LQKYRLAKYF PEKKEEKKAS CSEEKKAVSI IIDDDGKKKG TIQITEALRM 300 QMEVQKQLHE QLEVQRTLQL RIEEHARYLQ KIIEEQQKAG SALLSPKSLS SVTDPPKDSE 360 LPPPSPSAGA ESKTDSSSAL PSSKHKATDS ENFEKQASEK RIRLEEKLES ESEEAEVEDP 420 PAQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-24 | 202 | 259 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-24 | 202 | 259 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-24 | 202 | 259 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-24 | 202 | 259 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-24 | 202 | 259 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-24 | 202 | 259 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-24 | 202 | 259 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-24 | 202 | 259 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G000700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440038.1 | 0.0 | myb family transcription factor PHL6 isoform X2 | ||||
Swissprot | Q949U2 | 1e-131 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A2K1XN74 | 0.0 | A0A2K1XN74_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s15110.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13469 | 19 | 25 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-102 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G000700.1 |
Publications ? help Back to Top | |||
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