PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G158500.1
Common NamePOPTR_0013s15440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 332aa    MW: 37103.5 Da    PI: 5.0713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G158500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36.1e-21132182155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W AeIrdp+    r kr++lg+f+taeeAa  +++a++kl+g
  Potri.013G158500.1 132 KKFRGVRQRP-WGKWSAEIRDPT----RrKRVWLGTFDTAEEAATVYDRAALKLKG 182
                         59********.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.89E-34132190No hitNo description
SMARTSM003801.9E-38133196IPR001471AP2/ERF domain
PROSITE profilePS5103224.566133190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-31133191IPR001471AP2/ERF domain
PfamPF008471.5E-13133182IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-23133191IPR016177DNA-binding domain
PRINTSPR003679.9E-11134145IPR001471AP2/ERF domain
PRINTSPR003679.9E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MHLLFPNELQ PMFTSNATMS VQPKVKFTEH VFITSKLIEN QQLHPSSRTR QRLVRIIHTD  60
PDATDSSSDE EEEEQERKYV KRVKRQVSEI SLLEQETTAP AAPSSTTSND DQEPRRKRPS  120
SRLPLPDVSR QKKFRGVRQR PWGKWSAEIR DPTRRKRVWL GTFDTAEEAA TVYDRAALKL  180
KGPDAVTNFP TNSVITEKAH VNSGSSDVKC ESRESPSIRG TANVMASPAL VLRYVDLTPS  240
DAVLTEKAKV VDGQRESCES PLSGVHDMSS PTSVLPYEEL SPFDSLGYGD VDAFGFEIDV  300
PLSLPNSMLS GNFFDKEEFV DLDDFLVDAI C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-22129190163ATERF1
3gcc_A9e-22129190163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G158500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319978.20.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLB9I7670.0B9I767_POPTR; Uncharacterized protein
STRINGPOPTR_0013s15440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-34cytokinin response factor 4