PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G153400.1
Common NamePOPTR_0013s14960g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 592aa    MW: 64929.9 Da    PI: 7.69
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G153400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.3e-33258315260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Potri.013G153400.1 258 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 315
                         8****************************************.***************85 PP
2WRKY106.11.9e-33430488159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Potri.013G153400.1 430 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFQGCPVRKHVERASHDLRAVITTYEGKHNHD 488
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-29247316IPR003657WRKY domain
SuperFamilySSF1182901.44E-25252316IPR003657WRKY domain
PROSITE profilePS5081124.019252316IPR003657WRKY domain
SMARTSM007748.6E-37257315IPR003657WRKY domain
PfamPF031061.5E-25258314IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37415490IPR003657WRKY domain
SuperFamilySSF1182901.7E-29422490IPR003657WRKY domain
PROSITE profilePS5081138.377425490IPR003657WRKY domain
SMARTSM007741.3E-39430489IPR003657WRKY domain
PfamPF031067.9E-26431488IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAASSGSLDT SGNSHPQSSN NYFSFSTNSS NHYPFMTSSS FTDLLASNDE EPVNNNTGNS  60
KLGDRIAERT GSGVPKFKST PPPSLPLSPP PVSPSYYFAI PPGLSPTELL DSPVLLNPSN  120
ILPSPTTGTF PGQGLNWKSS SGNIQQNVKK EDRSFSDFSF QQPARPSTTS SAMFQSSNST  180
VQPGQQQTWG FQEPAKQDEF VSGKSNMVKM EYNSNSMKSF SPEIAAIQAN PQSNNGFQSD  240
HGNQPQQYQS VREQKRSDDG YNWRKYGQKQ VKGSENPRSY YKCTFPNCPT KKKVERSLDG  300
QITEIVYKGS HNHPKPQSTR RSSSTGSNPA MIPAPNSNSN EIQDQSYVTH GNGQMDSSVA  360
TPDNSSISIG DDDFDSQKSK SVGGDDLDED EPEAKRWKRE RDNEGISAPG SRTVREPRVV  420
VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTFQG CPVRKHVERA SHDLRAVITT  480
YEGKHNHDVP AARGSGSRSL QDHSNNGNNN AAMAIRPSTV NHVSNNPIRN QRAPPTATSE  540
GDMPFTLEML QSPGSFGFSG FGNLMGSYMS QSSTDEVLSR AKRELEVESF W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36249491878Probable WRKY transcription factor 4
2lex_A4e-36249491878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.9760.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G153400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1473030.0EF147303.1 Populus trichocarpa clone WS0122_H07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319959.10.0probable WRKY transcription factor 25
SwissprotQ6B6R41e-135WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLB9I6U50.0B9I6U5_POPTR; Uncharacterized protein
STRINGPOPTR_0013s14960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-107WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]